MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.0 nTPM
HPA Brain:123.0 nTPM
GTEx:67.0 nTPM
FANTOM5:206.5 Scaled Tags Per Million
Pig:65.8 nTPM
Mouse:96.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.2
1833 Male, age 53, unknown 124.3
1830 Male, age 51, unknown 119.4
2411 Female, age 72, unknown 116.3
1870 Female, age 42, unknown 106.4
2019 Male, age 18, unknown 105.2
2586 Male, age 75, left hemisphere 100.9
1827 Male, age 72, unknown 99.6
2828 Female, age 72, unknown 95.5
2219 Male, age 76, both hemispheres 93.5
2666 Male, age 74, left hemisphere 81.1
Dorsal raphe nucleus
nTPM: 113.2
2047 Male, age 72, unknown 130.0
2750 Male, age 76, both hemispheres 120.0
2016 Female, age 72, unknown 110.0
1828 Male, age 53, unknown 106.1
2298 Female, age 72, unknown 100.0
Inferior colliculus
nTPM: 102.1
2849 Male, age 72, unknown 109.4
1848 Female, age 42, unknown 109.2
1890 Male, age 53, unknown 97.9
2097 Female, age 72, unknown 92.0
Median raphe nucleus
nTPM: 123.0
2220 Male, age 76, midline 123.0
Periaquaductal grey, anterior
nTPM: 90.4
1947 Male, age 18, unknown 92.1
2502 Female, age 75, unknown 91.7
1795 Male, age 51, unknown 87.4
Periaquaductal grey, dorsal
nTPM: 98.6
2464 Female, age 72, unknown 110.8
2850 Male, age 76, both hemispheres 102.6
1840 Male, age 53, unknown 91.9
1831 Male, age 72, unknown 89.0
Periaquaductal grey, lateral
nTPM: 95.0
2140 Male, age 76, both hemispheres 100.6
2053 Male, age 18, unknown 100.3
2272 Male, age 74, both hemispheres 84.2
Pretectal area
nTPM: 102.7
2667 Female, age 75, unknown 130.9
2407 Male, age 75, both hemispheres 111.5
2825 Male, age 18, unknown 107.9
1815 Male, age 53, unknown 107.0
1817 Female, age 42, unknown 102.8
2316 Male, age 76, right hemisphere 98.5
1944 Female, age 72, unknown 97.2
2224 Female, age 72, unknown 96.1
2273 Male, age 74, both hemispheres 95.2
1816 Male, age 51, unknown 93.9
2007 Male, age 72, unknown 89.2
Red nucleus
nTPM: 121.5
1954 Female, age 42, unknown 135.0
1904 Male, age 53, unknown 134.2
1865 Male, age 51, unknown 129.4
2823 Male, age 76, right hemisphere 127.4
2503 Female, age 72, unknown 127.1
2588 Male, age 74, left hemisphere 126.8
1821 Female, age 72, unknown 126.1
2227 Male, age 72, unknown 118.4
2769 Male, age 72, unknown 117.5
2785 Male, age 18, unknown 107.6
2725 Female, age 75, unknown 106.0
2584 Male, age 75, left hemisphere 101.8
Substantia nigra
nTPM: 115.6
2409 Female, age 72, unknown 140.9
2241 Male, age 72, unknown 124.2
2583 Male, age 75, right hemisphere 121.2
2590 Female, age 75, unknown 121.0
2699 Male, age 18, unknown 118.3
1851 Male, age 51, unknown 114.4
1941 Male, age 53, unknown 113.1
1916 Female, age 42, unknown 106.8
1889 Female, age 72, unknown 104.1
2665 Male, age 74, both hemispheres 92.0
Superior colliculus
nTPM: 99.2
1895 Male, age 76, right hemisphere 118.0
1913 Female, age 42, unknown 105.0
1995 Male, age 72, unknown 102.0
2087 Female, age 72, unknown 101.1
2587 Male, age 74, left hemisphere 100.8
2664 Male, age 75, both hemispheres 98.0
1839 Male, age 51, unknown 97.1
1796 Male, age 53, unknown 94.7
2261 Male, age 18, unknown 93.2
2668 Female, age 75, unknown 82.3
Ventral tegmental area
nTPM: 105.2
2410 Female, age 72, unknown 123.7
2223 Female, age 72, unknown 108.9
2218 Male, age 76, both hemispheres 103.6
1915 Female, age 42, unknown 103.4
1942 Male, age 51, unknown 97.8
2021 Male, age 53, unknown 94.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.0
Samples: 139

Max nTPM: 152.5
Min nTPM: 32.8
Std nTPM: 18.2
Median nTPM: 63.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 152.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 131.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 126.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 120.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 115.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 107.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 96.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 96.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 91.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 89.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 206.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.5
FF:10158-103A5 76 years, female 206.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.8
Samples: 4

Max nTPM: 79.8
Min nTPM: 48.5
Sample A Female 78.8
Sample B Female 48.5
Sample C Male 79.8
Sample D Male 56.2
Midbrain
nTPM: 63.8
Samples: 4

Max nTPM: 69.0
Min nTPM: 59.8
Sample A Female 60.7
Sample B Female 59.8
Sample C Male 65.5
Sample D Male 69.0
Periaqueductal gray
nTPM: 53.6
Samples: 3

Max nTPM: 61.6
Min nTPM: 46.7
Sample B Female 52.4
Sample C Male 61.6
Sample D Male 46.7
Superior colliculi
nTPM: 59.4
Samples: 4

Max nTPM: 76.2
Min nTPM: 31.9
Sample A Female 76.2
Sample B Female 31.9
Sample C Male 65.2
Sample D Male 64.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 100.0
Min nTPM: 90.7
Sample A Male 90.7
Sample B Male 96.3
Sample C Female 100.0
Sample D Female 99.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1656 Antisense, RP_040604_01_C08, Mouse strain C57BL/6J (56 days, male) 0.4
1655 Antisense, RP_040604_01_C08, Mouse strain C57BL/6J (56 days, male) 0.2

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