MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1604.1 nTPM
HPA Brain:441.0 nTPM
GTEx:1604.1 nTPM
FANTOM5:532.1 Scaled Tags Per Million
Pig:126.5 nTPM
Mouse:391.5 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 441.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 380.1
2666 Male, age 74, left hemisphere 448.7
1870 Female, age 42, unknown 430.1
1830 Male, age 51, unknown 411.1
2411 Female, age 72, unknown 396.5
1833 Male, age 53, unknown 394.3
2828 Female, age 72, unknown 391.8
2019 Male, age 18, unknown 340.3
2219 Male, age 76, both hemispheres 340.0
2586 Male, age 75, left hemisphere 331.0
1827 Male, age 72, unknown 317.4
Dorsal raphe nucleus
nTPM: 393.1
2016 Female, age 72, unknown 444.6
2750 Male, age 76, both hemispheres 408.8
2298 Female, age 72, unknown 401.3
1828 Male, age 53, unknown 366.6
2047 Male, age 72, unknown 344.3
Inferior colliculus
nTPM: 354.3
2849 Male, age 72, unknown 369.7
1890 Male, age 53, unknown 368.0
1848 Female, age 42, unknown 341.3
2097 Female, age 72, unknown 338.1
Median raphe nucleus
nTPM: 361.9
2220 Male, age 76, midline 361.9
Periaquaductal grey, anterior
nTPM: 357.1
2502 Female, age 75, unknown 431.9
1947 Male, age 18, unknown 320.8
1795 Male, age 51, unknown 318.6
Periaquaductal grey, dorsal
nTPM: 373.2
2850 Male, age 76, both hemispheres 429.5
1840 Male, age 53, unknown 369.3
1831 Male, age 72, unknown 367.5
2464 Female, age 72, unknown 326.4
Periaquaductal grey, lateral
nTPM: 368.0
2053 Male, age 18, unknown 410.8
2140 Male, age 76, both hemispheres 393.4
2272 Male, age 74, both hemispheres 299.9
Pretectal area
nTPM: 345.1
1815 Male, age 53, unknown 406.3
2224 Female, age 72, unknown 380.1
2316 Male, age 76, right hemisphere 374.2
2825 Male, age 18, unknown 360.6
1817 Female, age 42, unknown 358.7
2407 Male, age 75, both hemispheres 349.9
2007 Male, age 72, unknown 348.5
1944 Female, age 72, unknown 314.5
2667 Female, age 75, unknown 309.3
2273 Male, age 74, both hemispheres 308.3
1816 Male, age 51, unknown 286.2
Red nucleus
nTPM: 441.0
1865 Male, age 51, unknown 524.0
2503 Female, age 72, unknown 519.4
1821 Female, age 72, unknown 489.2
1904 Male, age 53, unknown 468.7
2725 Female, age 75, unknown 450.9
2227 Male, age 72, unknown 437.5
2769 Male, age 72, unknown 429.2
2584 Male, age 75, left hemisphere 411.9
1954 Female, age 42, unknown 401.7
2823 Male, age 76, right hemisphere 395.5
2785 Male, age 18, unknown 395.0
2588 Male, age 74, left hemisphere 369.3
Substantia nigra
nTPM: 431.2
2699 Male, age 18, unknown 620.2
1851 Male, age 51, unknown 513.8
2665 Male, age 74, both hemispheres 488.9
2409 Female, age 72, unknown 448.4
1916 Female, age 42, unknown 428.1
1889 Female, age 72, unknown 414.8
2241 Male, age 72, unknown 397.2
2590 Female, age 75, unknown 372.5
1941 Male, age 53, unknown 348.8
2583 Male, age 75, right hemisphere 279.4
Superior colliculus
nTPM: 395.4
1995 Male, age 72, unknown 543.2
1913 Female, age 42, unknown 501.0
2587 Male, age 74, left hemisphere 499.7
2668 Female, age 75, unknown 387.4
1839 Male, age 51, unknown 376.9
1796 Male, age 53, unknown 360.3
2664 Male, age 75, both hemispheres 345.2
1895 Male, age 76, right hemisphere 342.2
2261 Male, age 18, unknown 302.0
2087 Female, age 72, unknown 296.5
Ventral tegmental area
nTPM: 426.6
1915 Female, age 42, unknown 468.9
2410 Female, age 72, unknown 455.8
2223 Female, age 72, unknown 448.4
2021 Male, age 53, unknown 432.2
2218 Male, age 76, both hemispheres 387.6
1942 Male, age 51, unknown 366.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1604.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1604.1
Samples: 139

Max nTPM: 4794.8
Min nTPM: 474.1
Std nTPM: 665.7
Median nTPM: 1509.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4794.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4098.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3856.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3502.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2867.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2850.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2827.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2800.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2670.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2631.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2626.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 532.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 532.1
FF:10158-103A5 76 years, female 532.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.6
Samples: 4

Max nTPM: 180.8
Min nTPM: 82.8
Sample A Female 180.8
Sample B Female 124.7
Sample C Male 82.8
Sample D Male 86.0
Midbrain
nTPM: 113.6
Samples: 4

Max nTPM: 173.5
Min nTPM: 75.3
Sample A Female 173.5
Sample B Female 117.7
Sample C Male 88.0
Sample D Male 75.3
Periaqueductal gray
nTPM: 82.9
Samples: 3

Max nTPM: 92.8
Min nTPM: 72.3
Sample B Female 92.8
Sample C Male 83.7
Sample D Male 72.3
Superior colliculi
nTPM: 126.5
Samples: 4

Max nTPM: 164.6
Min nTPM: 94.8
Sample A Female 164.6
Sample B Female 144.6
Sample C Male 102.1
Sample D Male 94.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 391.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 391.4
Samples: 4

Max nTPM: 435.8
Min nTPM: 351.7
Sample A Male 435.8
Sample B Male 398.8
Sample C Female 351.7
Sample D Female 379.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
100143515 Antisense, RP_110407_01_E05, Mouse strain C57BL/6J (56 days, male) 4.8

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