MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA Brain:57.9 nTPM
GTEx:20.8 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:15.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
1870 Female, age 42, unknown 54.9
2019 Male, age 18, unknown 53.6
2411 Female, age 72, unknown 51.9
1833 Male, age 53, unknown 49.8
1830 Male, age 51, unknown 49.7
2586 Male, age 75, left hemisphere 48.3
2828 Female, age 72, unknown 43.7
2666 Male, age 74, left hemisphere 41.8
1827 Male, age 72, unknown 39.7
2219 Male, age 76, both hemispheres 34.0
Dorsal raphe nucleus
nTPM: 44.3
2750 Male, age 76, both hemispheres 49.9
2047 Male, age 72, unknown 45.7
2016 Female, age 72, unknown 44.9
1828 Male, age 53, unknown 44.7
2298 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 42.6
1848 Female, age 42, unknown 44.8
1890 Male, age 53, unknown 44.2
2097 Female, age 72, unknown 42.2
2849 Male, age 72, unknown 39.3
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 41.1
2502 Female, age 75, unknown 50.7
1947 Male, age 18, unknown 38.8
1795 Male, age 51, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 42.8
2850 Male, age 76, both hemispheres 44.8
2464 Female, age 72, unknown 43.9
1831 Male, age 72, unknown 41.4
1840 Male, age 53, unknown 41.0
Periaquaductal grey, lateral
nTPM: 40.1
2053 Male, age 18, unknown 44.5
2140 Male, age 76, both hemispheres 38.9
2272 Male, age 74, both hemispheres 36.8
Pretectal area
nTPM: 41.9
1817 Female, age 42, unknown 46.7
1815 Male, age 53, unknown 45.9
2407 Male, age 75, both hemispheres 43.9
2273 Male, age 74, both hemispheres 43.6
1816 Male, age 51, unknown 41.3
2007 Male, age 72, unknown 41.3
2667 Female, age 75, unknown 41.3
2825 Male, age 18, unknown 41.0
2316 Male, age 76, right hemisphere 39.9
2224 Female, age 72, unknown 37.9
1944 Female, age 72, unknown 37.6
Red nucleus
nTPM: 57.9
1821 Female, age 72, unknown 71.4
1865 Male, age 51, unknown 67.5
1954 Female, age 42, unknown 67.1
1904 Male, age 53, unknown 65.6
2227 Male, age 72, unknown 63.1
2769 Male, age 72, unknown 61.3
2503 Female, age 72, unknown 59.0
2588 Male, age 74, left hemisphere 51.7
2823 Male, age 76, right hemisphere 51.1
2785 Male, age 18, unknown 48.5
2584 Male, age 75, left hemisphere 47.1
2725 Female, age 75, unknown 41.2
Substantia nigra
nTPM: 44.7
1851 Male, age 51, unknown 48.5
2583 Male, age 75, right hemisphere 48.0
2241 Male, age 72, unknown 47.1
2699 Male, age 18, unknown 47.1
1889 Female, age 72, unknown 46.3
2409 Female, age 72, unknown 44.7
2590 Female, age 75, unknown 44.1
1916 Female, age 42, unknown 42.2
2665 Male, age 74, both hemispheres 39.6
1941 Male, age 53, unknown 39.4
Superior colliculus
nTPM: 42.9
2664 Male, age 75, both hemispheres 52.5
2668 Female, age 75, unknown 48.3
1913 Female, age 42, unknown 43.8
2587 Male, age 74, left hemisphere 43.4
1995 Male, age 72, unknown 43.3
1895 Male, age 76, right hemisphere 42.4
1839 Male, age 51, unknown 41.0
2261 Male, age 18, unknown 39.3
2087 Female, age 72, unknown 38.0
1796 Male, age 53, unknown 36.7
Ventral tegmental area
nTPM: 47.7
2223 Female, age 72, unknown 71.1
2410 Female, age 72, unknown 46.4
2021 Male, age 53, unknown 44.7
1942 Male, age 51, unknown 42.6
1915 Female, age 42, unknown 40.7
2218 Male, age 76, both hemispheres 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.8
Samples: 139

Max nTPM: 32.8
Min nTPM: 10.1
Std nTPM: 5.4
Median nTPM: 20.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 32.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 31.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 31.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 31.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 30.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 30.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.6
FF:10158-103A5 76 years, female 82.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 26.6
Sample A Female 35.1
Sample B Female 26.6
Sample C Male 30.3
Sample D Male 34.1
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 58.7
Min nTPM: 24.9
Sample A Female 58.7
Sample B Female 33.5
Sample C Male 33.0
Sample D Male 24.9
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.6
Min nTPM: 25.3
Sample B Female 28.6
Sample C Male 27.2
Sample D Male 25.3
Superior colliculi
nTPM: 28.8
Samples: 4

Max nTPM: 35.1
Min nTPM: 21.5
Sample A Female 29.4
Sample B Female 21.5
Sample C Male 35.1
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 17.0
Sample C Female 15.7
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69873391 Antisense, RP_050512_01_B09, Mouse strain C57BL/6J (56 days, male) 2.5
77799057 Antisense, RP_070212_03_E03, Mouse strain C57BL/6J (56 days, male) 0.6
70813155 Antisense, RP_050712_03_C11, Mouse strain C57BL/6J (56 days, male) 0.2

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