MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:23.1 nTPM
GTEx:4.2 nTPM
FANTOM5:0.9 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:9.8 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2019 Male, age 18, unknown 20.5
2219 Male, age 76, both hemispheres 20.1
2411 Female, age 72, unknown 18.9
1827 Male, age 72, unknown 18.7
2586 Male, age 75, left hemisphere 17.8
1830 Male, age 51, unknown 14.7
2666 Male, age 74, left hemisphere 14.2
1833 Male, age 53, unknown 13.3
2828 Female, age 72, unknown 13.0
1870 Female, age 42, unknown 10.6
Dorsal raphe nucleus
nTPM: 22.1
1828 Male, age 53, unknown 28.9
2047 Male, age 72, unknown 26.5
2298 Female, age 72, unknown 19.6
2016 Female, age 72, unknown 17.7
2750 Male, age 76, both hemispheres 17.6
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 32.8
1848 Female, age 42, unknown 22.9
1890 Male, age 53, unknown 19.2
2849 Male, age 72, unknown 17.6
Median raphe nucleus
nTPM: 19.4
2220 Male, age 76, midline 19.4
Periaquaductal grey, anterior
nTPM: 22.3
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 20.6
1795 Male, age 51, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 15.3
2464 Female, age 72, unknown 18.0
2850 Male, age 76, both hemispheres 15.8
1840 Male, age 53, unknown 15.1
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 13.2
2140 Male, age 76, both hemispheres 15.3
2272 Male, age 74, both hemispheres 13.3
2053 Male, age 18, unknown 11.1
Pretectal area
nTPM: 15.1
2007 Male, age 72, unknown 19.2
2224 Female, age 72, unknown 17.1
1816 Male, age 51, unknown 16.5
1817 Female, age 42, unknown 16.2
2825 Male, age 18, unknown 16.1
2407 Male, age 75, both hemispheres 16.0
1944 Female, age 72, unknown 15.9
2316 Male, age 76, right hemisphere 15.6
2273 Male, age 74, both hemispheres 12.2
2667 Female, age 75, unknown 11.6
1815 Male, age 53, unknown 9.7
Red nucleus
nTPM: 20.6
1821 Female, age 72, unknown 30.2
2227 Male, age 72, unknown 24.8
2769 Male, age 72, unknown 23.8
1954 Female, age 42, unknown 23.1
1865 Male, age 51, unknown 22.8
2823 Male, age 76, right hemisphere 21.7
2503 Female, age 72, unknown 19.6
2785 Male, age 18, unknown 19.1
1904 Male, age 53, unknown 17.1
2588 Male, age 74, left hemisphere 16.6
2725 Female, age 75, unknown 14.1
2584 Male, age 75, left hemisphere 13.8
Substantia nigra
nTPM: 16.5
1941 Male, age 53, unknown 40.3
2241 Male, age 72, unknown 18.7
1889 Female, age 72, unknown 16.2
2665 Male, age 74, both hemispheres 15.0
2409 Female, age 72, unknown 14.7
1851 Male, age 51, unknown 14.3
1916 Female, age 42, unknown 13.6
2590 Female, age 75, unknown 12.8
2699 Male, age 18, unknown 12.0
2583 Male, age 75, right hemisphere 7.2
Superior colliculus
nTPM: 16.0
1895 Male, age 76, right hemisphere 27.4
2664 Male, age 75, both hemispheres 23.5
2668 Female, age 75, unknown 20.1
1839 Male, age 51, unknown 16.9
2261 Male, age 18, unknown 16.7
2587 Male, age 74, left hemisphere 15.3
2087 Female, age 72, unknown 14.4
1796 Male, age 53, unknown 12.3
1913 Female, age 42, unknown 7.1
1995 Male, age 72, unknown 6.5
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 24.5
1942 Male, age 51, unknown 21.2
2410 Female, age 72, unknown 20.1
1915 Female, age 42, unknown 17.8
2021 Male, age 53, unknown 14.4
2223 Female, age 72, unknown 10.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 49.3
Min nTPM: 0.0
Std nTPM: 5.8
Median nTPM: 2.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 22.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 17.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 14.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 13.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 12.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.9
FF:10158-103A5 76 years, female 0.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 40.3
Min nTPM: 11.9
Sample A Female 40.1
Sample B Female 20.7
Sample C Male 40.3
Sample D Male 11.9
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 28.6
Min nTPM: 17.7
Sample A Female 17.7
Sample B Female 22.4
Sample C Male 18.9
Sample D Male 28.6
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.4
Min nTPM: 15.4
Sample B Female 18.4
Sample C Male 18.4
Sample D Male 15.4
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 25.4
Min nTPM: 10.9
Sample A Female 18.3
Sample B Female 10.9
Sample C Male 25.4
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.1
Sample A Male 8.1
Sample B Male 10.3
Sample C Female 10.7
Sample D Female 10.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
71234667 Antisense, RP_050505_02_H06, Mouse strain C57BL/6J (56 days, male) 1.9
74743257 Antisense, RP_060220_04_E03, Mouse strain C57BL/6J (56 days, male) 1.4

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