MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:21.8 nTPM
GTEx:26.4 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:21.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
2828 Female, age 72, unknown 24.8
1870 Female, age 42, unknown 24.7
2586 Male, age 75, left hemisphere 24.3
2411 Female, age 72, unknown 18.6
1833 Male, age 53, unknown 18.2
2019 Male, age 18, unknown 18.0
1830 Male, age 51, unknown 17.8
1827 Male, age 72, unknown 17.3
2666 Male, age 74, left hemisphere 17.1
2219 Male, age 76, both hemispheres 13.1
Dorsal raphe nucleus
nTPM: 21.6
2016 Female, age 72, unknown 26.6
2298 Female, age 72, unknown 23.9
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 20.4
2750 Male, age 76, both hemispheres 15.7
Inferior colliculus
nTPM: 17.9
1848 Female, age 42, unknown 19.0
1890 Male, age 53, unknown 18.8
2849 Male, age 72, unknown 17.4
2097 Female, age 72, unknown 16.2
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Periaquaductal grey, anterior
nTPM: 17.5
1795 Male, age 51, unknown 19.9
2502 Female, age 75, unknown 17.9
1947 Male, age 18, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 20.5
2850 Male, age 76, both hemispheres 23.5
1831 Male, age 72, unknown 20.7
1840 Male, age 53, unknown 20.7
2464 Female, age 72, unknown 17.0
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 26.7
2140 Male, age 76, both hemispheres 22.5
2272 Male, age 74, both hemispheres 15.8
Pretectal area
nTPM: 17.9
2316 Male, age 76, right hemisphere 21.5
2273 Male, age 74, both hemispheres 20.9
2407 Male, age 75, both hemispheres 20.7
2667 Female, age 75, unknown 19.3
2825 Male, age 18, unknown 18.5
1815 Male, age 53, unknown 18.2
1817 Female, age 42, unknown 17.7
2224 Female, age 72, unknown 16.8
1944 Female, age 72, unknown 15.2
1816 Male, age 51, unknown 15.0
2007 Male, age 72, unknown 13.5
Red nucleus
nTPM: 21.8
1954 Female, age 42, unknown 26.7
1904 Male, age 53, unknown 24.1
2227 Male, age 72, unknown 24.1
2769 Male, age 72, unknown 23.4
1865 Male, age 51, unknown 23.3
1821 Female, age 72, unknown 21.4
2503 Female, age 72, unknown 21.3
2785 Male, age 18, unknown 21.1
2823 Male, age 76, right hemisphere 20.5
2588 Male, age 74, left hemisphere 19.4
2725 Female, age 75, unknown 18.3
2584 Male, age 75, left hemisphere 17.4
Substantia nigra
nTPM: 20.0
2699 Male, age 18, unknown 26.6
2590 Female, age 75, unknown 22.3
2583 Male, age 75, right hemisphere 21.6
1851 Male, age 51, unknown 20.3
2665 Male, age 74, both hemispheres 19.5
2409 Female, age 72, unknown 18.5
1916 Female, age 42, unknown 18.0
1941 Male, age 53, unknown 17.9
1889 Female, age 72, unknown 17.8
2241 Male, age 72, unknown 17.6
Superior colliculus
nTPM: 20.5
1995 Male, age 72, unknown 28.3
1913 Female, age 42, unknown 27.6
2664 Male, age 75, both hemispheres 24.3
2587 Male, age 74, left hemisphere 22.0
1839 Male, age 51, unknown 18.8
2668 Female, age 75, unknown 18.8
1796 Male, age 53, unknown 18.1
2087 Female, age 72, unknown 17.1
1895 Male, age 76, right hemisphere 15.6
2261 Male, age 18, unknown 14.5
Ventral tegmental area
nTPM: 19.7
2223 Female, age 72, unknown 21.1
1942 Male, age 51, unknown 21.0
1915 Female, age 42, unknown 20.9
2021 Male, age 53, unknown 20.4
2410 Female, age 72, unknown 18.5
2218 Male, age 76, both hemispheres 16.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 139

Max nTPM: 66.8
Min nTPM: 7.0
Std nTPM: 8.6
Median nTPM: 24.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 51.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 42.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 41.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 41.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 39.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.0
Samples: 4

Max nTPM: 37.2
Min nTPM: 30.6
Sample A Female 30.6
Sample B Female 31.9
Sample C Male 32.1
Sample D Male 37.2
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 46.8
Min nTPM: 26.4
Sample A Female 46.8
Sample B Female 36.4
Sample C Male 26.4
Sample D Male 27.9
Periaqueductal gray
nTPM: 39.7
Samples: 3

Max nTPM: 42.9
Min nTPM: 34.7
Sample B Female 41.4
Sample C Male 42.9
Sample D Male 34.7
Superior colliculi
nTPM: 28.4
Samples: 4

Max nTPM: 30.1
Min nTPM: 25.5
Sample A Female 28.5
Sample B Female 30.1
Sample C Male 25.5
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 26.5
Min nTPM: 18.4
Sample A Male 26.5
Sample B Male 18.4
Sample C Female 18.9
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68191318 Antisense, RP_041123_02_C12, Mouse strain C57BL/6J (56 days, male) 0.1

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