MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:20.8 nTPM
GTEx:14.2 nTPM
FANTOM5:128.9 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:103.7 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
1830 Male, age 51, unknown 23.1
2411 Female, age 72, unknown 22.2
1833 Male, age 53, unknown 22.0
2019 Male, age 18, unknown 21.1
1870 Female, age 42, unknown 20.3
2828 Female, age 72, unknown 19.1
2219 Male, age 76, both hemispheres 17.5
1827 Male, age 72, unknown 17.3
2586 Male, age 75, left hemisphere 17.3
2666 Male, age 74, left hemisphere 17.0
Dorsal raphe nucleus
nTPM: 18.4
2750 Male, age 76, both hemispheres 22.8
2016 Female, age 72, unknown 19.0
1828 Male, age 53, unknown 17.7
2047 Male, age 72, unknown 16.5
2298 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 17.1
1848 Female, age 42, unknown 18.1
1890 Male, age 53, unknown 17.7
2849 Male, age 72, unknown 17.1
2097 Female, age 72, unknown 15.6
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 17.3
1947 Male, age 18, unknown 17.9
2502 Female, age 75, unknown 17.3
1795 Male, age 51, unknown 16.6
Periaquaductal grey, dorsal
nTPM: 17.1
2464 Female, age 72, unknown 19.2
2850 Male, age 76, both hemispheres 17.3
1831 Male, age 72, unknown 17.1
1840 Male, age 53, unknown 14.9
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 18.5
2053 Male, age 18, unknown 17.5
2140 Male, age 76, both hemispheres 17.0
Pretectal area
nTPM: 17.2
2316 Male, age 76, right hemisphere 21.8
2273 Male, age 74, both hemispheres 18.5
2407 Male, age 75, both hemispheres 18.5
2667 Female, age 75, unknown 18.2
1815 Male, age 53, unknown 17.9
2224 Female, age 72, unknown 17.1
2825 Male, age 18, unknown 16.8
2007 Male, age 72, unknown 15.5
1817 Female, age 42, unknown 15.1
1944 Female, age 72, unknown 14.8
1816 Male, age 51, unknown 14.6
Red nucleus
nTPM: 20.8
2823 Male, age 76, right hemisphere 24.6
2503 Female, age 72, unknown 22.6
2769 Male, age 72, unknown 22.5
1904 Male, age 53, unknown 22.1
1865 Male, age 51, unknown 21.7
2227 Male, age 72, unknown 21.5
1954 Female, age 42, unknown 19.9
2588 Male, age 74, left hemisphere 19.8
2584 Male, age 75, left hemisphere 19.6
2785 Male, age 18, unknown 19.5
1821 Female, age 72, unknown 18.7
2725 Female, age 75, unknown 17.5
Substantia nigra
nTPM: 17.2
2409 Female, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 18.6
2590 Female, age 75, unknown 18.5
2241 Male, age 72, unknown 17.5
1851 Male, age 51, unknown 17.2
2699 Male, age 18, unknown 17.1
1889 Female, age 72, unknown 16.0
1941 Male, age 53, unknown 16.0
2665 Male, age 74, both hemispheres 15.1
1916 Female, age 42, unknown 13.9
Superior colliculus
nTPM: 18.6
1913 Female, age 42, unknown 22.0
1995 Male, age 72, unknown 21.9
2668 Female, age 75, unknown 18.9
1895 Male, age 76, right hemisphere 18.2
1839 Male, age 51, unknown 18.0
2261 Male, age 18, unknown 18.0
2587 Male, age 74, left hemisphere 17.4
2087 Female, age 72, unknown 17.3
2664 Male, age 75, both hemispheres 17.1
1796 Male, age 53, unknown 16.7
Ventral tegmental area
nTPM: 17.6
2223 Female, age 72, unknown 20.0
2021 Male, age 53, unknown 18.7
2410 Female, age 72, unknown 18.3
1942 Male, age 51, unknown 17.6
2218 Male, age 76, both hemispheres 16.2
1915 Female, age 42, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 24.3
Min nTPM: 8.2
Std nTPM: 3.3
Median nTPM: 13.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 23.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 22.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 20.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 20.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 20.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 20.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 19.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.9
FF:10158-103A5 76 years, female 128.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.8
Sample A Female 21.5
Sample B Female 18.5
Sample C Male 18.6
Sample D Male 16.8
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 18.1
Sample A Female 21.4
Sample B Female 19.3
Sample C Male 18.1
Sample D Male 20.4
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 19.1
Min nTPM: 18.3
Sample B Female 18.4
Sample C Male 19.1
Sample D Male 18.3
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.8
Sample A Female 24.4
Sample B Female 18.8
Sample C Male 20.7
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 103.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.7
Samples: 4

Max nTPM: 110.8
Min nTPM: 91.7
Sample A Male 110.8
Sample B Male 106.9
Sample C Female 105.3
Sample D Female 91.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70546311 Antisense, RP_050623_04_A05, Mouse strain C57BL/6J (56 days, male) 1.8

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