MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:12.1 nTPM
GTEx:9.1 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:8.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2219 Male, age 76, both hemispheres 12.6
1833 Male, age 53, unknown 12.1
1830 Male, age 51, unknown 11.5
2411 Female, age 72, unknown 11.4
1827 Male, age 72, unknown 11.3
2019 Male, age 18, unknown 11.3
2828 Female, age 72, unknown 10.9
2586 Male, age 75, left hemisphere 9.9
1870 Female, age 42, unknown 9.7
2666 Male, age 74, left hemisphere 9.4
Dorsal raphe nucleus
nTPM: 10.8
2750 Male, age 76, both hemispheres 11.2
2047 Male, age 72, unknown 10.9
1828 Male, age 53, unknown 10.8
2298 Female, age 72, unknown 10.8
2016 Female, age 72, unknown 10.0
Inferior colliculus
nTPM: 11.4
1848 Female, age 42, unknown 12.4
1890 Male, age 53, unknown 11.4
2097 Female, age 72, unknown 11.4
2849 Male, age 72, unknown 10.2
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Periaquaductal grey, anterior
nTPM: 9.6
1795 Male, age 51, unknown 10.2
2502 Female, age 75, unknown 9.5
1947 Male, age 18, unknown 9.2
Periaquaductal grey, dorsal
nTPM: 11.3
2850 Male, age 76, both hemispheres 12.9
1831 Male, age 72, unknown 11.6
1840 Male, age 53, unknown 11.6
2464 Female, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 12.1
2140 Male, age 76, both hemispheres 13.7
2272 Male, age 74, both hemispheres 11.4
2053 Male, age 18, unknown 11.2
Pretectal area
nTPM: 11.7
2407 Male, age 75, both hemispheres 13.5
1944 Female, age 72, unknown 13.1
2667 Female, age 75, unknown 12.6
1816 Male, age 51, unknown 12.1
1817 Female, age 42, unknown 12.0
2273 Male, age 74, both hemispheres 12.0
2007 Male, age 72, unknown 11.9
1815 Male, age 53, unknown 11.4
2825 Male, age 18, unknown 11.2
2224 Female, age 72, unknown 10.0
2316 Male, age 76, right hemisphere 9.5
Red nucleus
nTPM: 11.6
2823 Male, age 76, right hemisphere 12.9
1904 Male, age 53, unknown 12.8
2725 Female, age 75, unknown 12.8
1865 Male, age 51, unknown 12.4
1821 Female, age 72, unknown 12.3
1954 Female, age 42, unknown 12.2
2785 Male, age 18, unknown 11.4
2769 Male, age 72, unknown 11.1
2227 Male, age 72, unknown 11.0
2503 Female, age 72, unknown 11.0
2588 Male, age 74, left hemisphere 10.3
2584 Male, age 75, left hemisphere 8.8
Substantia nigra
nTPM: 12.0
1916 Female, age 42, unknown 14.3
2590 Female, age 75, unknown 13.1
2699 Male, age 18, unknown 13.0
1851 Male, age 51, unknown 11.9
1941 Male, age 53, unknown 11.9
2241 Male, age 72, unknown 11.9
1889 Female, age 72, unknown 11.5
2665 Male, age 74, both hemispheres 11.3
2409 Female, age 72, unknown 11.1
2583 Male, age 75, right hemisphere 10.4
Superior colliculus
nTPM: 11.4
1913 Female, age 42, unknown 13.6
1995 Male, age 72, unknown 12.5
1895 Male, age 76, right hemisphere 12.2
2261 Male, age 18, unknown 12.0
2587 Male, age 74, left hemisphere 12.0
2664 Male, age 75, both hemispheres 11.8
2087 Female, age 72, unknown 11.4
1796 Male, age 53, unknown 11.1
1839 Male, age 51, unknown 9.1
2668 Female, age 75, unknown 8.8
Ventral tegmental area
nTPM: 11.2
2218 Male, age 76, both hemispheres 13.0
2223 Female, age 72, unknown 12.4
1942 Male, age 51, unknown 11.3
1915 Female, age 42, unknown 11.0
2410 Female, age 72, unknown 10.6
2021 Male, age 53, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.1
Samples: 139

Max nTPM: 21.4
Min nTPM: 3.0
Std nTPM: 2.2
Median nTPM: 9.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 21.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 14.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 13.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 13.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 13.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 13.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 13.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 12.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.5
Sample A Female 9.0
Sample B Female 9.7
Sample C Male 8.5
Sample D Male 9.8
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.9
Sample A Female 10.4
Sample B Female 10.9
Sample C Male 12.2
Sample D Male 9.9
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.5
Min nTPM: 8.4
Sample B Female 10.5
Sample C Male 8.4
Sample D Male 8.7
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.0
Sample A Female 9.9
Sample B Female 9.0
Sample C Male 12.4
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.6
Sample A Male 7.6
Sample B Male 8.9
Sample C Female 9.6
Sample D Female 8.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77414162 Antisense, RP_070205_01_F06, Mouse strain C57BL/6J (56 days, male) 0.0
80514002 Antisense, RP_071128_04_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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