HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:17.1 nTPM
HPA Brain:88.1 nTPM
GTEx:17.1 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:56.8 nTPM
Mouse:29.0 nTPM
Allen mouse:7.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015323Antibody HPA015810
Glial cells Not detectedLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.1
Sample id Sample description nTPM
Hippocampus
nTPM: 83.4
2148 Female, age 91, left hemisphere 87.7
2621 Female, age 67, right hemisphere 85.4
1898 Male, age 80, left hemisphere 84.3
1911 Female, age 85, right hemisphere 82.6
2529 Female, age 94, left hemisphere 82.4
1855 Male, age 76, left hemisphere 77.7
Dentate gyrus
nTPM: 79.9
1927 Female, age 91, both hemispheres 95.2
2010 Male, age 76, both hemispheres 79.4
2530 Female, age 94, left hemisphere 77.3
2528 Male, age 74, both hemispheres 76.3
2246 Female, age 85, both hemispheres 75.9
2531 Female, age 67, both hemispheres 75.6
Entorhinal gyrus
nTPM: 83.0
1938 Female, age 85, left hemisphere 92.8
2764 Male, age 80, right hemisphere 88.0
1787 Male, age 76, left hemisphere 83.3
2613 Female, age 94, left hemisphere 82.6
2117 Female, age 91, right hemisphere 77.7
2686 Male, age 75, right hemisphere 73.6
Hippocampus, CA1
nTPM: 85.5
2749 Male, age 80, left hemisphere 106.4
2045 Male, age 76, both hemispheres 86.1
1873 Female, age 85, both hemispheres 84.8
2527 Male, age 74, both hemispheres 81.2
2082 Female, age 91, right hemisphere 68.8
Hippocampus, CA2
nTPM: 80.5
1963 Male, age 80, left hemisphere 93.9
1892 Male, age 76, both hemispheres 83.8
2249 Male, age 74, both hemispheres 79.5
1940 Female, age 85, left hemisphere 76.0
2437 Female, age 94, left hemisphere 76.0
2113 Female, age 91, right hemisphere 74.2
Hippocampus, CA3
nTPM: 84.0
2137 Male, age 80, left hemisphere 100.9
2620 Female, age 94, left hemisphere 84.4
1867 Male, age 76, both hemispheres 82.9
2861 Female, age 67, both hemispheres 82.5
1891 Female, age 85, both hemispheres 77.6
2436 Male, age 74, both hemispheres 75.6
Parahippocampal cortex
nTPM: 80.7
1850 Male, age 80, both hemispheres 88.2
2245 Female, age 91, both hemispheres 86.6
2532 Female, age 72, left hemisphere 84.7
1933 Female, age 85, both hemispheres 83.2
1990 Female, age 91, right hemisphere 82.4
2693 Female, age 94, both hemispheres 79.5
2250 Female, age 67, right hemisphere 78.5
2622 Female, age 67, right hemisphere 77.4
2018 Male, age 76, both hemispheres 73.7
2692 Male, age 74, both hemispheres 73.2
Perirhinal gyrus
nTPM: 88.1
1794 Male, age 80, right hemisphere 94.4
1847 Female, age 91, left hemisphere 90.1
2521 Female, age 94, right hemisphere 87.5
1841 Female, age 85, right hemisphere 87.1
2848 Male, age 76, right hemisphere 81.4
Subiculum
nTPM: 79.4
2438 Female, age 94, left hemisphere 86.6
2729 Female, age 91, right hemisphere 79.9
1901 Male, age 80, both hemispheres 79.2
1977 Female, age 85, both hemispheres 78.0
2619 Male, age 74, both hemispheres 77.4
2042 Male, age 76, both hemispheres 75.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.1
Samples: 197

Max nTPM: 28.8
Min nTPM: 8.8
Std nTPM: 3.7
Median nTPM: 16.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 28.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 26.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 25.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 24.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 24.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 24.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 23.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 23.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 23.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 23.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.3
FF:10153-102I9 76 years, female 45.3
FF:10169-103B7 60 years, female 39.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.8
Pig sample Sample description nTPM
Subiculum
nTPM: 52.9
Samples: 4

Max nTPM: 63.2
Min nTPM: 45.9
Sample A Female 63.2
Sample B Female 50.1
Sample C Male 52.5
Sample D Male 45.9
Dorsal hippocampus
nTPM: 56.9
Samples: 4

Max nTPM: 61.7
Min nTPM: 50.8
Sample A Female 61.7
Sample B Female 58.1
Sample C Male 56.8
Sample D Male 50.8
Entorhinal cortex
nTPM: 53.6
Samples: 4

Max nTPM: 58.9
Min nTPM: 48.1
Sample A Female 58.9
Sample B Female 51.7
Sample C Male 55.6
Sample D Male 48.1
Ventral hippocampus
nTPM: 53.9
Samples: 4

Max nTPM: 65.1
Min nTPM: 44.6
Sample A Female 51.5
Sample B Female 44.6
Sample C Male 54.5
Sample D Male 65.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.0
Samples: 4

Max nTPM: 34.9
Min nTPM: 26.7
Sample A Male 27.5
Sample B Male 26.7
Sample C Female 27.0
Sample D Female 34.9
Hippocampal formation
nTPM: 28.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 24.8
Sample A Male 26.8
Sample B Male 30.6
Sample C Female 32.5
Sample D Female 24.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.0
2170 Antisense, RP_Baylor_253901, Mouse strain C57BL/6J (56 days, male) 7.1
79907941 Antisense, RP_071218_03_E12, Mouse strain C57BL/6J (56 days, male) 7.0
79904316 Antisense, RP_071218_03_E12, Mouse strain C57BL/6J (56 days, male) 5.9

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