MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA Brain:42.8 nTPM
GTEx:15.6 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:26.2 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 49.2
2828 Female, age 72, unknown 41.4
1827 Male, age 72, unknown 40.3
2666 Male, age 74, left hemisphere 39.1
1833 Male, age 53, unknown 38.8
1830 Male, age 51, unknown 38.5
1870 Female, age 42, unknown 37.1
2019 Male, age 18, unknown 37.0
2411 Female, age 72, unknown 36.4
2219 Male, age 76, both hemispheres 35.5
Dorsal raphe nucleus
nTPM: 38.8
2750 Male, age 76, both hemispheres 41.9
1828 Male, age 53, unknown 40.7
2298 Female, age 72, unknown 38.9
2016 Female, age 72, unknown 37.4
2047 Male, age 72, unknown 35.0
Inferior colliculus
nTPM: 33.9
2849 Male, age 72, unknown 35.5
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 33.1
1848 Female, age 42, unknown 31.6
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 42.8
1795 Male, age 51, unknown 46.3
1947 Male, age 18, unknown 42.2
2502 Female, age 75, unknown 39.9
Periaquaductal grey, dorsal
nTPM: 35.2
2850 Male, age 76, both hemispheres 38.4
1840 Male, age 53, unknown 34.6
2464 Female, age 72, unknown 34.0
1831 Male, age 72, unknown 33.7
Periaquaductal grey, lateral
nTPM: 40.4
2272 Male, age 74, both hemispheres 46.1
2140 Male, age 76, both hemispheres 40.4
2053 Male, age 18, unknown 34.8
Pretectal area
nTPM: 37.1
2407 Male, age 75, both hemispheres 43.8
2273 Male, age 74, both hemispheres 42.3
2667 Female, age 75, unknown 40.3
2316 Male, age 76, right hemisphere 39.3
2224 Female, age 72, unknown 37.6
2825 Male, age 18, unknown 36.8
2007 Male, age 72, unknown 36.3
1816 Male, age 51, unknown 33.9
1817 Female, age 42, unknown 33.8
1815 Male, age 53, unknown 33.1
1944 Female, age 72, unknown 31.1
Red nucleus
nTPM: 40.3
2227 Male, age 72, unknown 43.8
2769 Male, age 72, unknown 43.0
2584 Male, age 75, left hemisphere 42.5
1904 Male, age 53, unknown 42.2
2725 Female, age 75, unknown 42.1
2785 Male, age 18, unknown 42.0
2823 Male, age 76, right hemisphere 42.0
2588 Male, age 74, left hemisphere 39.5
2503 Female, age 72, unknown 37.8
1865 Male, age 51, unknown 37.2
1954 Female, age 42, unknown 36.7
1821 Female, age 72, unknown 34.7
Substantia nigra
nTPM: 38.3
1916 Female, age 42, unknown 42.9
2583 Male, age 75, right hemisphere 42.7
1851 Male, age 51, unknown 41.5
2699 Male, age 18, unknown 40.6
2590 Female, age 75, unknown 38.6
2665 Male, age 74, both hemispheres 38.3
2409 Female, age 72, unknown 36.3
1941 Male, age 53, unknown 35.9
2241 Male, age 72, unknown 35.3
1889 Female, age 72, unknown 31.3
Superior colliculus
nTPM: 38.3
2664 Male, age 75, both hemispheres 44.8
2261 Male, age 18, unknown 42.6
1913 Female, age 42, unknown 39.0
1796 Male, age 53, unknown 38.9
1995 Male, age 72, unknown 38.4
1839 Male, age 51, unknown 38.3
2087 Female, age 72, unknown 38.2
2587 Male, age 74, left hemisphere 36.7
2668 Female, age 75, unknown 35.2
1895 Male, age 76, right hemisphere 30.4
Ventral tegmental area
nTPM: 39.1
2218 Male, age 76, both hemispheres 40.7
2021 Male, age 53, unknown 40.4
1942 Male, age 51, unknown 39.4
1915 Female, age 42, unknown 39.1
2223 Female, age 72, unknown 38.0
2410 Female, age 72, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.6
Samples: 139

Max nTPM: 27.5
Min nTPM: 8.4
Std nTPM: 3.5
Median nTPM: 15.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 24.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 23.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 22.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 22.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 21.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 21.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 21.2
Sample A Female 24.7
Sample B Female 21.3
Sample C Male 21.2
Sample D Male 26.1
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 36.7
Min nTPM: 16.6
Sample A Female 36.7
Sample B Female 16.6
Sample C Male 25.1
Sample D Male 20.7
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 18.6
Min nTPM: 16.7
Sample B Female 16.7
Sample C Male 18.2
Sample D Male 18.6
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 28.3
Min nTPM: 21.1
Sample A Female 23.5
Sample B Female 28.3
Sample C Male 21.1
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 24.8
Sample A Male 25.4
Sample B Male 24.8
Sample C Female 26.8
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69201696 Antisense, RP_050324_03_B01, Mouse strain C57BL/6J (56 days, male) 5.2
70919340 Antisense, RP_050713_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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