MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.9 nTPM
HPA Brain:26.9 nTPM
GTEx:30.9 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:21.2 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2019 Male, age 18, unknown 31.5
2586 Male, age 75, left hemisphere 26.8
1827 Male, age 72, unknown 26.6
2828 Female, age 72, unknown 23.8
2666 Male, age 74, left hemisphere 23.2
2411 Female, age 72, unknown 22.3
2219 Male, age 76, both hemispheres 22.2
1830 Male, age 51, unknown 19.4
1833 Male, age 53, unknown 18.7
1870 Female, age 42, unknown 17.8
Dorsal raphe nucleus
nTPM: 19.8
2298 Female, age 72, unknown 22.2
2750 Male, age 76, both hemispheres 21.4
1828 Male, age 53, unknown 19.6
2016 Female, age 72, unknown 17.9
2047 Male, age 72, unknown 17.9
Inferior colliculus
nTPM: 19.8
2097 Female, age 72, unknown 22.4
1890 Male, age 53, unknown 21.8
1848 Female, age 42, unknown 18.8
2849 Male, age 72, unknown 16.1
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Periaquaductal grey, anterior
nTPM: 24.6
1795 Male, age 51, unknown 26.0
2502 Female, age 75, unknown 24.6
1947 Male, age 18, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 18.6
1831 Male, age 72, unknown 19.6
2464 Female, age 72, unknown 19.6
1840 Male, age 53, unknown 18.1
2850 Male, age 76, both hemispheres 17.2
Periaquaductal grey, lateral
nTPM: 18.9
2272 Male, age 74, both hemispheres 21.3
2053 Male, age 18, unknown 18.7
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 26.9
2007 Male, age 72, unknown 38.3
1816 Male, age 51, unknown 34.2
1817 Female, age 42, unknown 32.1
1815 Male, age 53, unknown 29.1
1944 Female, age 72, unknown 28.2
2667 Female, age 75, unknown 25.7
2407 Male, age 75, both hemispheres 24.8
2273 Male, age 74, both hemispheres 23.7
2316 Male, age 76, right hemisphere 22.4
2224 Female, age 72, unknown 19.5
2825 Male, age 18, unknown 18.1
Red nucleus
nTPM: 21.5
2785 Male, age 18, unknown 29.5
2588 Male, age 74, left hemisphere 23.9
2584 Male, age 75, left hemisphere 23.7
1865 Male, age 51, unknown 20.6
2725 Female, age 75, unknown 20.6
1821 Female, age 72, unknown 20.5
2769 Male, age 72, unknown 20.1
2823 Male, age 76, right hemisphere 20.0
2503 Female, age 72, unknown 19.9
1904 Male, age 53, unknown 19.8
2227 Male, age 72, unknown 19.7
1954 Female, age 42, unknown 19.6
Substantia nigra
nTPM: 24.5
1916 Female, age 42, unknown 29.4
2409 Female, age 72, unknown 27.9
2583 Male, age 75, right hemisphere 26.1
1889 Female, age 72, unknown 26.0
1941 Male, age 53, unknown 25.8
1851 Male, age 51, unknown 24.7
2665 Male, age 74, both hemispheres 23.7
2241 Male, age 72, unknown 22.5
2590 Female, age 75, unknown 21.8
2699 Male, age 18, unknown 17.0
Superior colliculus
nTPM: 23.2
2087 Female, age 72, unknown 27.5
1796 Male, age 53, unknown 27.3
2668 Female, age 75, unknown 26.9
2261 Male, age 18, unknown 26.6
2664 Male, age 75, both hemispheres 24.9
1995 Male, age 72, unknown 21.2
1913 Female, age 42, unknown 20.5
1895 Male, age 76, right hemisphere 19.7
2587 Male, age 74, left hemisphere 19.0
1839 Male, age 51, unknown 18.5
Ventral tegmental area
nTPM: 21.7
2410 Female, age 72, unknown 24.2
1942 Male, age 51, unknown 23.3
1915 Female, age 42, unknown 22.6
2218 Male, age 76, both hemispheres 21.9
2223 Female, age 72, unknown 19.5
2021 Male, age 53, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 56.5
Min nTPM: 13.0
Std nTPM: 7.9
Median nTPM: 29.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 46.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 44.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 43.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.9
Samples: 4

Max nTPM: 76.9
Min nTPM: 28.4
Sample A Female 76.9
Sample B Female 32.3
Sample C Male 41.8
Sample D Male 28.4
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 65.3
Min nTPM: 29.5
Sample A Female 65.3
Sample B Female 39.3
Sample C Male 36.9
Sample D Male 29.5
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 36.4
Min nTPM: 27.3
Sample B Female 33.0
Sample C Male 36.4
Sample D Male 27.3
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 67.6
Min nTPM: 27.8
Sample A Female 67.6
Sample B Female 27.8
Sample C Male 35.6
Sample D Male 35.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.9
Sample A Male 20.7
Sample B Male 22.2
Sample C Female 19.9
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
275680 Antisense, RP_040609_01_B03, Mouse strain C57BL/6J (56 days, male) 1.7

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