MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:60.0 nTPM
GTEx:15.4 nTPM
FANTOM5:55.9 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:3.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.0
2586 Male, age 75, left hemisphere 91.3
2219 Male, age 76, both hemispheres 69.7
2828 Female, age 72, unknown 63.3
2666 Male, age 74, left hemisphere 59.3
2019 Male, age 18, unknown 58.8
1830 Male, age 51, unknown 56.8
1833 Male, age 53, unknown 53.2
1870 Female, age 42, unknown 53.1
1827 Male, age 72, unknown 49.8
2411 Female, age 72, unknown 44.8
Dorsal raphe nucleus
nTPM: 50.2
2016 Female, age 72, unknown 57.6
2750 Male, age 76, both hemispheres 51.0
1828 Male, age 53, unknown 49.4
2047 Male, age 72, unknown 49.1
2298 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 53.6
2849 Male, age 72, unknown 55.7
1848 Female, age 42, unknown 54.7
1890 Male, age 53, unknown 53.8
2097 Female, age 72, unknown 50.1
Median raphe nucleus
nTPM: 48.9
2220 Male, age 76, midline 48.9
Periaquaductal grey, anterior
nTPM: 58.2
2502 Female, age 75, unknown 65.7
1795 Male, age 51, unknown 58.1
1947 Male, age 18, unknown 50.7
Periaquaductal grey, dorsal
nTPM: 50.6
1831 Male, age 72, unknown 54.2
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 48.6
2850 Male, age 76, both hemispheres 46.7
Periaquaductal grey, lateral
nTPM: 52.9
2140 Male, age 76, both hemispheres 55.5
2053 Male, age 18, unknown 51.9
2272 Male, age 74, both hemispheres 51.2
Pretectal area
nTPM: 53.8
2407 Male, age 75, both hemispheres 69.4
2316 Male, age 76, right hemisphere 58.2
2007 Male, age 72, unknown 57.5
1817 Female, age 42, unknown 57.0
1815 Male, age 53, unknown 53.6
2273 Male, age 74, both hemispheres 53.4
1816 Male, age 51, unknown 52.7
1944 Female, age 72, unknown 52.4
2825 Male, age 18, unknown 48.7
2667 Female, age 75, unknown 46.1
2224 Female, age 72, unknown 43.2
Red nucleus
nTPM: 57.9
2584 Male, age 75, left hemisphere 77.1
2785 Male, age 18, unknown 68.0
2227 Male, age 72, unknown 61.3
2769 Male, age 72, unknown 61.3
1865 Male, age 51, unknown 59.7
1904 Male, age 53, unknown 58.0
1954 Female, age 42, unknown 55.6
2503 Female, age 72, unknown 53.9
2588 Male, age 74, left hemisphere 53.6
2823 Male, age 76, right hemisphere 51.3
2725 Female, age 75, unknown 50.1
1821 Female, age 72, unknown 44.7
Substantia nigra
nTPM: 47.5
2583 Male, age 75, right hemisphere 68.0
2590 Female, age 75, unknown 55.3
2665 Male, age 74, both hemispheres 54.3
2699 Male, age 18, unknown 48.8
1889 Female, age 72, unknown 45.1
1941 Male, age 53, unknown 44.7
1851 Male, age 51, unknown 44.6
1916 Female, age 42, unknown 40.5
2241 Male, age 72, unknown 37.8
2409 Female, age 72, unknown 35.5
Superior colliculus
nTPM: 59.3
2664 Male, age 75, both hemispheres 87.1
1995 Male, age 72, unknown 63.3
2261 Male, age 18, unknown 60.1
1913 Female, age 42, unknown 59.9
2668 Female, age 75, unknown 57.5
1796 Male, age 53, unknown 57.4
1839 Male, age 51, unknown 57.3
2087 Female, age 72, unknown 54.6
2587 Male, age 74, left hemisphere 52.4
1895 Male, age 76, right hemisphere 43.5
Ventral tegmental area
nTPM: 50.1
2223 Female, age 72, unknown 60.1
2021 Male, age 53, unknown 55.7
1942 Male, age 51, unknown 53.3
2218 Male, age 76, both hemispheres 46.4
1915 Female, age 42, unknown 42.5
2410 Female, age 72, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 32.0
Min nTPM: 7.7
Std nTPM: 3.6
Median nTPM: 15.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 28.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 24.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 23.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 23.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 23.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 22.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 22.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 22.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 20.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.9
FF:10158-103A5 76 years, female 55.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.2
Samples: 4

Max nTPM: 48.6
Min nTPM: 40.4
Sample A Female 48.6
Sample B Female 48.2
Sample C Male 40.4
Sample D Male 47.4
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 79.4
Min nTPM: 33.4
Sample A Female 79.4
Sample B Female 33.4
Sample C Male 43.2
Sample D Male 42.5
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 38.9
Min nTPM: 34.7
Sample B Female 35.1
Sample C Male 38.9
Sample D Male 34.7
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 49.0
Min nTPM: 36.5
Sample A Female 49.0
Sample B Female 39.9
Sample C Male 36.5
Sample D Male 44.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.1
Sample A Male 3.9
Sample B Male 3.1
Sample C Female 3.4
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71325474 Antisense, RP_050825_02_H11, Mouse strain C57BL/6J (56 days, male) 0.4

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