HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:117.0 nTPM
HPA Brain:36.1 nTPM
GTEx:117.0 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:31.1 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030514
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.1
Sample id Sample description nTPM
Hippocampus
nTPM: 30.3
1898 Male, age 80, left hemisphere 32.4
2529 Female, age 94, left hemisphere 32.4
2621 Female, age 67, right hemisphere 32.0
1855 Male, age 76, left hemisphere 29.3
2148 Female, age 91, left hemisphere 28.8
1911 Female, age 85, right hemisphere 27.1
Dentate gyrus
nTPM: 29.9
2530 Female, age 94, left hemisphere 38.7
2531 Female, age 67, both hemispheres 30.7
2010 Male, age 76, both hemispheres 30.0
2246 Female, age 85, both hemispheres 28.4
1927 Female, age 91, both hemispheres 28.0
2528 Male, age 74, both hemispheres 23.9
Entorhinal gyrus
nTPM: 36.1
2686 Male, age 75, right hemisphere 44.6
2764 Male, age 80, right hemisphere 38.0
2613 Female, age 94, left hemisphere 34.5
1938 Female, age 85, left hemisphere 33.7
2117 Female, age 91, right hemisphere 33.4
1787 Male, age 76, left hemisphere 32.0
Hippocampus, CA1
nTPM: 29.9
2749 Male, age 80, left hemisphere 37.8
2045 Male, age 76, both hemispheres 29.5
2082 Female, age 91, right hemisphere 28.5
1873 Female, age 85, both hemispheres 27.6
2527 Male, age 74, both hemispheres 26.3
Hippocampus, CA2
nTPM: 29.6
1892 Male, age 76, both hemispheres 33.3
1963 Male, age 80, left hemisphere 32.8
2437 Female, age 94, left hemisphere 31.1
1940 Female, age 85, left hemisphere 28.7
2113 Female, age 91, right hemisphere 27.4
2249 Male, age 74, both hemispheres 24.3
Hippocampus, CA3
nTPM: 30.2
2137 Male, age 80, left hemisphere 34.4
1867 Male, age 76, both hemispheres 32.6
2620 Female, age 94, left hemisphere 31.6
2861 Female, age 67, both hemispheres 31.1
1891 Female, age 85, both hemispheres 29.0
2436 Male, age 74, both hemispheres 22.4
Parahippocampal cortex
nTPM: 31.9
1850 Male, age 80, both hemispheres 36.1
2622 Female, age 67, right hemisphere 34.9
2532 Female, age 72, left hemisphere 34.1
2245 Female, age 91, both hemispheres 33.9
2692 Male, age 74, both hemispheres 32.5
1933 Female, age 85, both hemispheres 31.2
1990 Female, age 91, right hemisphere 31.0
2018 Male, age 76, both hemispheres 30.9
2693 Female, age 94, both hemispheres 28.7
2250 Female, age 67, right hemisphere 26.1
Perirhinal gyrus
nTPM: 33.6
2848 Male, age 76, right hemisphere 36.7
1794 Male, age 80, right hemisphere 35.7
1847 Female, age 91, left hemisphere 34.4
1841 Female, age 85, right hemisphere 33.6
2521 Female, age 94, right hemisphere 27.6
Subiculum
nTPM: 30.9
1901 Male, age 80, both hemispheres 34.3
1977 Female, age 85, both hemispheres 33.0
2042 Male, age 76, both hemispheres 33.0
2438 Female, age 94, left hemisphere 29.8
2619 Male, age 74, both hemispheres 28.3
2729 Female, age 91, right hemisphere 27.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 117.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 117.0
Samples: 197

Max nTPM: 294.7
Min nTPM: 50.3
Std nTPM: 34.2
Median nTPM: 109.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 294.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 252.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 214.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 213.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 203.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 195.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 192.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 192.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 189.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 184.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 181.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.9
FF:10153-102I9 76 years, female 88.9
FF:10169-103B7 60 years, female 78.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Subiculum
nTPM: 26.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 22.2
Sample A Female 36.2
Sample B Female 23.9
Sample C Male 23.8
Sample D Male 22.2
Dorsal hippocampus
nTPM: 26.5
Samples: 4

Max nTPM: 33.0
Min nTPM: 20.0
Sample A Female 33.0
Sample B Female 26.7
Sample C Male 26.3
Sample D Male 20.0
Entorhinal cortex
nTPM: 28.9
Samples: 4

Max nTPM: 34.3
Min nTPM: 24.8
Sample A Female 28.8
Sample B Female 34.3
Sample C Male 27.8
Sample D Male 24.8
Ventral hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 20.1
Sample A Female 25.2
Sample B Female 20.1
Sample C Male 27.0
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 33.9
Min nTPM: 29.4
Sample A Male 29.6
Sample B Male 29.4
Sample C Female 31.4
Sample D Female 33.9
Hippocampal formation
nTPM: 28.0
Samples: 4

Max nTPM: 32.5
Min nTPM: 25.3
Sample A Male 32.5
Sample B Male 25.3
Sample C Female 27.8
Sample D Female 26.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
69113632 Antisense, RP_050316_02_E01, Mouse strain C57BL/6J (56 days, male) 2.7

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