MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA Brain:159.6 nTPM
GTEx:44.6 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:72.9 nTPM
Mouse:114.8 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.9
2219 Male, age 76, both hemispheres 132.0
1827 Male, age 72, unknown 92.9
2411 Female, age 72, unknown 92.0
2666 Male, age 74, left hemisphere 86.2
2019 Male, age 18, unknown 85.6
1833 Male, age 53, unknown 80.8
2828 Female, age 72, unknown 78.5
1830 Male, age 51, unknown 73.3
1870 Female, age 42, unknown 70.3
2586 Male, age 75, left hemisphere 67.6
Dorsal raphe nucleus
nTPM: 108.3
2750 Male, age 76, both hemispheres 136.3
2298 Female, age 72, unknown 133.3
2047 Male, age 72, unknown 129.0
1828 Male, age 53, unknown 83.1
2016 Female, age 72, unknown 59.8
Inferior colliculus
nTPM: 75.1
2097 Female, age 72, unknown 90.0
1848 Female, age 42, unknown 73.3
2849 Male, age 72, unknown 69.5
1890 Male, age 53, unknown 67.7
Median raphe nucleus
nTPM: 159.6
2220 Male, age 76, midline 159.6
Periaquaductal grey, anterior
nTPM: 91.6
1947 Male, age 18, unknown 110.1
1795 Male, age 51, unknown 84.0
2502 Female, age 75, unknown 80.7
Periaquaductal grey, dorsal
nTPM: 68.3
1840 Male, age 53, unknown 79.1
2464 Female, age 72, unknown 69.2
2850 Male, age 76, both hemispheres 66.9
1831 Male, age 72, unknown 58.2
Periaquaductal grey, lateral
nTPM: 59.9
2140 Male, age 76, both hemispheres 62.7
2053 Male, age 18, unknown 58.8
2272 Male, age 74, both hemispheres 58.2
Pretectal area
nTPM: 85.6
1816 Male, age 51, unknown 111.9
1944 Female, age 72, unknown 106.6
2007 Male, age 72, unknown 105.7
1817 Female, age 42, unknown 100.0
1815 Male, age 53, unknown 95.0
2224 Female, age 72, unknown 84.2
2667 Female, age 75, unknown 80.4
2825 Male, age 18, unknown 73.0
2407 Male, age 75, both hemispheres 70.3
2316 Male, age 76, right hemisphere 63.7
2273 Male, age 74, both hemispheres 51.3
Red nucleus
nTPM: 74.6
1821 Female, age 72, unknown 85.5
2725 Female, age 75, unknown 81.2
2584 Male, age 75, left hemisphere 80.3
2823 Male, age 76, right hemisphere 78.8
1954 Female, age 42, unknown 75.0
2503 Female, age 72, unknown 74.8
2785 Male, age 18, unknown 73.1
2588 Male, age 74, left hemisphere 73.0
1904 Male, age 53, unknown 69.5
1865 Male, age 51, unknown 69.1
2227 Male, age 72, unknown 68.2
2769 Male, age 72, unknown 66.3
Substantia nigra
nTPM: 137.3
1916 Female, age 42, unknown 253.8
1851 Male, age 51, unknown 171.3
2241 Male, age 72, unknown 166.9
1941 Male, age 53, unknown 164.4
1889 Female, age 72, unknown 118.1
2409 Female, age 72, unknown 116.2
2699 Male, age 18, unknown 110.1
2665 Male, age 74, both hemispheres 100.1
2590 Female, age 75, unknown 94.9
2583 Male, age 75, right hemisphere 77.5
Superior colliculus
nTPM: 77.8
2668 Female, age 75, unknown 109.9
2087 Female, age 72, unknown 101.5
1796 Male, age 53, unknown 93.1
1895 Male, age 76, right hemisphere 89.9
2261 Male, age 18, unknown 85.3
1839 Male, age 51, unknown 69.1
2587 Male, age 74, left hemisphere 64.3
2664 Male, age 75, both hemispheres 57.0
1913 Female, age 42, unknown 56.7
1995 Male, age 72, unknown 51.2
Ventral tegmental area
nTPM: 121.1
2218 Male, age 76, both hemispheres 159.4
1915 Female, age 42, unknown 147.9
2410 Female, age 72, unknown 144.9
1942 Male, age 51, unknown 96.3
2223 Female, age 72, unknown 91.6
2021 Male, age 53, unknown 86.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.6
Samples: 139

Max nTPM: 225.7
Min nTPM: 7.5
Std nTPM: 38.3
Median nTPM: 29.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 225.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 216.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 177.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 144.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 137.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 130.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 127.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 124.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 111.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 106.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 96.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.2
FF:10158-103A5 76 years, female 54.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.2
Samples: 4

Max nTPM: 94.6
Min nTPM: 25.6
Sample A Female 94.6
Sample B Female 53.4
Sample C Male 83.1
Sample D Male 25.6
Midbrain
nTPM: 59.4
Samples: 4

Max nTPM: 89.8
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 46.6
Sample C Male 89.8
Sample D Male 62.4
Periaqueductal gray
nTPM: 38.4
Samples: 3

Max nTPM: 48.2
Min nTPM: 29.8
Sample B Female 37.3
Sample C Male 48.2
Sample D Male 29.8
Superior colliculi
nTPM: 72.9
Samples: 4

Max nTPM: 92.8
Min nTPM: 57.2
Sample A Female 77.1
Sample B Female 64.6
Sample C Male 92.8
Sample D Male 57.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 119.5
Min nTPM: 112.7
Sample A Male 112.7
Sample B Male 119.5
Sample C Female 114.2
Sample D Female 112.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69837160 Antisense, RP_050217_01_A11, Mouse strain C57BL/6J (56 days, male) 7.0

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