MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA Brain:37.4 nTPM
GTEx:27.8 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:0.2 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2219 Male, age 76, both hemispheres 46.3
1827 Male, age 72, unknown 28.9
2411 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 23.2
1833 Male, age 53, unknown 21.2
2019 Male, age 18, unknown 20.8
1830 Male, age 51, unknown 19.1
2828 Female, age 72, unknown 17.6
1870 Female, age 42, unknown 17.2
2666 Male, age 74, left hemisphere 16.5
Dorsal raphe nucleus
nTPM: 30.2
2047 Male, age 72, unknown 37.3
2298 Female, age 72, unknown 35.3
1828 Male, age 53, unknown 31.5
2750 Male, age 76, both hemispheres 25.2
2016 Female, age 72, unknown 21.8
Inferior colliculus
nTPM: 30.9
2097 Female, age 72, unknown 36.4
1890 Male, age 53, unknown 30.7
2849 Male, age 72, unknown 29.8
1848 Female, age 42, unknown 26.9
Median raphe nucleus
nTPM: 35.8
2220 Male, age 76, midline 35.8
Periaquaductal grey, anterior
nTPM: 25.4
2502 Female, age 75, unknown 32.1
1947 Male, age 18, unknown 23.7
1795 Male, age 51, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 22.8
1840 Male, age 53, unknown 27.2
2464 Female, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 20.2
1831 Male, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 22.8
2053 Male, age 18, unknown 15.0
2272 Male, age 74, both hemispheres 14.0
Pretectal area
nTPM: 18.5
2224 Female, age 72, unknown 28.4
2825 Male, age 18, unknown 25.0
2007 Male, age 72, unknown 21.6
1816 Male, age 51, unknown 21.2
2316 Male, age 76, right hemisphere 20.2
1944 Female, age 72, unknown 19.3
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 13.0
2667 Female, age 75, unknown 11.7
2273 Male, age 74, both hemispheres 9.5
Red nucleus
nTPM: 20.7
2769 Male, age 72, unknown 24.2
2227 Male, age 72, unknown 23.0
1954 Female, age 42, unknown 22.8
2725 Female, age 75, unknown 22.8
1821 Female, age 72, unknown 22.4
2588 Male, age 74, left hemisphere 21.4
2503 Female, age 72, unknown 20.5
2584 Male, age 75, left hemisphere 19.5
1904 Male, age 53, unknown 18.9
2785 Male, age 18, unknown 18.0
2823 Male, age 76, right hemisphere 17.7
1865 Male, age 51, unknown 17.1
Substantia nigra
nTPM: 37.4
1916 Female, age 42, unknown 69.3
2665 Male, age 74, both hemispheres 66.8
1851 Male, age 51, unknown 41.4
2699 Male, age 18, unknown 39.2
2241 Male, age 72, unknown 38.3
1941 Male, age 53, unknown 32.8
2409 Female, age 72, unknown 24.9
1889 Female, age 72, unknown 22.2
2590 Female, age 75, unknown 21.5
2583 Male, age 75, right hemisphere 17.9
Superior colliculus
nTPM: 19.8
2668 Female, age 75, unknown 30.5
1895 Male, age 76, right hemisphere 26.8
1796 Male, age 53, unknown 26.7
2664 Male, age 75, both hemispheres 23.2
1839 Male, age 51, unknown 21.2
2087 Female, age 72, unknown 20.8
2261 Male, age 18, unknown 16.4
2587 Male, age 74, left hemisphere 15.9
1913 Female, age 42, unknown 8.6
1995 Male, age 72, unknown 7.9
Ventral tegmental area
nTPM: 35.4
1915 Female, age 42, unknown 46.0
2218 Male, age 76, both hemispheres 45.3
2410 Female, age 72, unknown 37.8
1942 Male, age 51, unknown 34.8
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 23.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 139

Max nTPM: 96.1
Min nTPM: 1.8
Std nTPM: 23.2
Median nTPM: 21.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 96.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 93.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 82.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 80.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 78.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 76.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 75.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 73.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 69.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 68.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.0
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.4
Sample A Female 3.1
Sample B Female 1.6
Sample C Male 1.4
Sample D Male 2.0
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.3
Sample A Female 1.6
Sample B Female 2.1
Sample C Male 1.3
Sample D Male 1.4
Periaqueductal gray
nTPM: 1.8
Samples: 3

Max nTPM: 2.0
Min nTPM: 1.7
Sample B Female 1.8
Sample C Male 1.7
Sample D Male 2.0
Superior colliculi
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Female 1.3
Sample B Female 1.5
Sample C Male 1.1
Sample D Male 1.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
72182947 Antisense, RP_051005_02_D12, Mouse strain C57BL/6J (56 days, male) 5.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org