HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:13.6 nTPM
GTEx:23.5 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:92.9 nTPM
Mouse:96.4 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA059320
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Hippocampus
nTPM: 13.0
2529 Female, age 94, left hemisphere 14.0
2148 Female, age 91, left hemisphere 13.4
1898 Male, age 80, left hemisphere 13.0
1911 Female, age 85, right hemisphere 12.7
1855 Male, age 76, left hemisphere 12.6
2621 Female, age 67, right hemisphere 12.2
Dentate gyrus
nTPM: 12.2
2530 Female, age 94, left hemisphere 15.1
2010 Male, age 76, both hemispheres 12.2
2528 Male, age 74, both hemispheres 12.1
2246 Female, age 85, both hemispheres 11.6
2531 Female, age 67, both hemispheres 11.1
1927 Female, age 91, both hemispheres 11.0
Entorhinal gyrus
nTPM: 12.9
2764 Male, age 80, right hemisphere 15.1
2117 Female, age 91, right hemisphere 13.4
1938 Female, age 85, left hemisphere 12.4
2613 Female, age 94, left hemisphere 12.4
2686 Male, age 75, right hemisphere 12.2
1787 Male, age 76, left hemisphere 11.9
Hippocampus, CA1
nTPM: 12.4
2749 Male, age 80, left hemisphere 16.1
1873 Female, age 85, both hemispheres 12.3
2527 Male, age 74, both hemispheres 12.1
2082 Female, age 91, right hemisphere 11.4
2045 Male, age 76, both hemispheres 10.2
Hippocampus, CA2
nTPM: 12.3
1963 Male, age 80, left hemisphere 14.4
1892 Male, age 76, both hemispheres 13.6
2437 Female, age 94, left hemisphere 11.8
2113 Female, age 91, right hemisphere 11.6
2249 Male, age 74, both hemispheres 11.5
1940 Female, age 85, left hemisphere 11.0
Hippocampus, CA3
nTPM: 12.9
2620 Female, age 94, left hemisphere 14.0
2137 Male, age 80, left hemisphere 13.6
1867 Male, age 76, both hemispheres 13.3
1891 Female, age 85, both hemispheres 12.8
2861 Female, age 67, both hemispheres 11.9
2436 Male, age 74, both hemispheres 11.6
Parahippocampal cortex
nTPM: 12.2
1850 Male, age 80, both hemispheres 14.8
2692 Male, age 74, both hemispheres 13.3
2245 Female, age 91, both hemispheres 12.9
2693 Female, age 94, both hemispheres 12.9
2532 Female, age 72, left hemisphere 12.6
1990 Female, age 91, right hemisphere 12.2
2018 Male, age 76, both hemispheres 12.0
1933 Female, age 85, both hemispheres 11.7
2250 Female, age 67, right hemisphere 10.1
2622 Female, age 67, right hemisphere 9.8
Perirhinal gyrus
nTPM: 12.7
2848 Male, age 76, right hemisphere 13.6
1794 Male, age 80, right hemisphere 13.4
1841 Female, age 85, right hemisphere 13.1
2521 Female, age 94, right hemisphere 12.0
1847 Female, age 91, left hemisphere 11.3
Subiculum
nTPM: 13.6
1901 Male, age 80, both hemispheres 15.3
2042 Male, age 76, both hemispheres 14.9
1977 Female, age 85, both hemispheres 13.6
2438 Female, age 94, left hemisphere 13.0
2619 Male, age 74, both hemispheres 12.3
2729 Female, age 91, right hemisphere 12.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.5
Samples: 197

Max nTPM: 46.2
Min nTPM: 11.6
Std nTPM: 5.5
Median nTPM: 22.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 46.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 43.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 43.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 41.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 36.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 34.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 34.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 33.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 33.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 32.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 32.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.7
FF:10153-102I9 76 years, female 26.9
FF:10169-103B7 60 years, female 14.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 92.9
Pig sample Sample description nTPM
Subiculum
nTPM: 75.6
Samples: 4

Max nTPM: 115.4
Min nTPM: 59.5
Sample A Female 115.4
Sample B Female 59.5
Sample C Male 64.9
Sample D Male 62.6
Dorsal hippocampus
nTPM: 92.9
Samples: 4

Max nTPM: 125.3
Min nTPM: 62.2
Sample A Female 119.7
Sample B Female 62.2
Sample C Male 125.3
Sample D Male 64.3
Entorhinal cortex
nTPM: 87.7
Samples: 4

Max nTPM: 97.9
Min nTPM: 74.1
Sample A Female 92.3
Sample B Female 86.3
Sample C Male 97.9
Sample D Male 74.1
Ventral hippocampus
nTPM: 72.7
Samples: 4

Max nTPM: 90.8
Min nTPM: 48.4
Sample A Female 74.8
Sample B Female 48.4
Sample C Male 76.6
Sample D Male 90.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 96.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 93.9
Samples: 4

Max nTPM: 97.1
Min nTPM: 90.9
Sample A Male 95.0
Sample B Male 90.9
Sample C Female 92.5
Sample D Female 97.1
Hippocampal formation
nTPM: 96.4
Samples: 4

Max nTPM: 106.9
Min nTPM: 87.2
Sample A Male 106.9
Sample B Male 92.1
Sample C Female 99.4
Sample D Female 87.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
70474767 Antisense, RP_050614_04_H12, Mouse strain C57BL/6J (56 days, male) 3.9

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