MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA Brain:18.0 nTPM
GTEx:28.2 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:87.0 nTPM
Mouse:86.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2666 Male, age 74, left hemisphere 18.8
2019 Male, age 18, unknown 17.1
2411 Female, age 72, unknown 17.1
1870 Female, age 42, unknown 16.5
2586 Male, age 75, left hemisphere 16.5
1833 Male, age 53, unknown 16.0
1827 Male, age 72, unknown 15.4
1830 Male, age 51, unknown 15.4
2828 Female, age 72, unknown 14.6
2219 Male, age 76, both hemispheres 12.9
Dorsal raphe nucleus
nTPM: 14.1
2750 Male, age 76, both hemispheres 17.4
1828 Male, age 53, unknown 15.3
2016 Female, age 72, unknown 13.2
2047 Male, age 72, unknown 12.8
2298 Female, age 72, unknown 11.6
Inferior colliculus
nTPM: 14.4
2097 Female, age 72, unknown 15.4
1890 Male, age 53, unknown 14.9
1848 Female, age 42, unknown 13.6
2849 Male, age 72, unknown 13.6
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Periaquaductal grey, anterior
nTPM: 14.1
1947 Male, age 18, unknown 14.7
2502 Female, age 75, unknown 14.5
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 12.1
2464 Female, age 72, unknown 13.6
1831 Male, age 72, unknown 13.2
1840 Male, age 53, unknown 10.9
2850 Male, age 76, both hemispheres 10.9
Periaquaductal grey, lateral
nTPM: 11.2
2053 Male, age 18, unknown 12.9
2272 Male, age 74, both hemispheres 10.9
2140 Male, age 76, both hemispheres 9.8
Pretectal area
nTPM: 14.2
2407 Male, age 75, both hemispheres 16.6
1815 Male, age 53, unknown 15.9
1817 Female, age 42, unknown 15.8
2007 Male, age 72, unknown 15.8
1816 Male, age 51, unknown 15.5
2316 Male, age 76, right hemisphere 14.0
1944 Female, age 72, unknown 13.8
2667 Female, age 75, unknown 13.7
2825 Male, age 18, unknown 13.6
2224 Female, age 72, unknown 10.7
2273 Male, age 74, both hemispheres 10.6
Red nucleus
nTPM: 17.6
1821 Female, age 72, unknown 20.0
1865 Male, age 51, unknown 19.3
2725 Female, age 75, unknown 18.8
2588 Male, age 74, left hemisphere 18.6
2823 Male, age 76, right hemisphere 17.5
1904 Male, age 53, unknown 17.4
2584 Male, age 75, left hemisphere 17.3
2503 Female, age 72, unknown 17.1
2769 Male, age 72, unknown 17.0
1954 Female, age 42, unknown 16.8
2785 Male, age 18, unknown 16.1
2227 Male, age 72, unknown 15.5
Substantia nigra
nTPM: 18.0
2409 Female, age 72, unknown 21.7
2241 Male, age 72, unknown 21.0
2699 Male, age 18, unknown 18.9
1851 Male, age 51, unknown 18.2
1916 Female, age 42, unknown 18.0
1941 Male, age 53, unknown 17.5
2583 Male, age 75, right hemisphere 17.3
2665 Male, age 74, both hemispheres 16.2
1889 Female, age 72, unknown 15.9
2590 Female, age 75, unknown 15.1
Superior colliculus
nTPM: 14.7
1913 Female, age 42, unknown 16.9
2587 Male, age 74, left hemisphere 16.2
2668 Female, age 75, unknown 16.2
1895 Male, age 76, right hemisphere 15.1
1796 Male, age 53, unknown 14.4
1839 Male, age 51, unknown 14.3
2664 Male, age 75, both hemispheres 14.2
1995 Male, age 72, unknown 14.1
2087 Female, age 72, unknown 14.0
2261 Male, age 18, unknown 12.1
Ventral tegmental area
nTPM: 16.0
1915 Female, age 42, unknown 18.6
2410 Female, age 72, unknown 18.0
2223 Female, age 72, unknown 15.9
1942 Male, age 51, unknown 14.9
2021 Male, age 53, unknown 14.5
2218 Male, age 76, both hemispheres 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.2
Samples: 139

Max nTPM: 49.4
Min nTPM: 15.6
Std nTPM: 6.6
Median nTPM: 27.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 44.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 44.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 43.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 42.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 39.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 38.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 38.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.0
Samples: 4

Max nTPM: 115.8
Min nTPM: 62.4
Sample A Female 115.8
Sample B Female 62.4
Sample C Male 97.8
Sample D Male 72.0
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 99.1
Min nTPM: 79.2
Sample A Female 99.1
Sample B Female 79.8
Sample C Male 84.2
Sample D Male 79.2
Periaqueductal gray
nTPM: 68.6
Samples: 3

Max nTPM: 79.3
Min nTPM: 59.4
Sample B Female 67.0
Sample C Male 79.3
Sample D Male 59.4
Superior colliculi
nTPM: 87.0
Samples: 4

Max nTPM: 121.3
Min nTPM: 53.9
Sample A Female 121.3
Sample B Female 53.9
Sample C Male 88.1
Sample D Male 84.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.9
Samples: 4

Max nTPM: 90.6
Min nTPM: 83.0
Sample A Male 89.2
Sample B Male 84.8
Sample C Female 83.0
Sample D Female 90.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70474767 Antisense, RP_050614_04_H12, Mouse strain C57BL/6J (56 days, male) 0.8

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