MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.8 nTPM
HPA Brain:104.1 nTPM
GTEx:184.8 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:122.6 nTPM
Mouse:129.1 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.8
2411 Female, age 72, unknown 108.6
2019 Male, age 18, unknown 100.1
1827 Male, age 72, unknown 94.2
1870 Female, age 42, unknown 91.1
1833 Male, age 53, unknown 83.8
2828 Female, age 72, unknown 82.3
1830 Male, age 51, unknown 79.9
2219 Male, age 76, both hemispheres 79.9
2666 Male, age 74, left hemisphere 75.6
2586 Male, age 75, left hemisphere 72.5
Dorsal raphe nucleus
nTPM: 104.1
2298 Female, age 72, unknown 145.0
2047 Male, age 72, unknown 105.3
2750 Male, age 76, both hemispheres 99.0
1828 Male, age 53, unknown 90.7
2016 Female, age 72, unknown 80.7
Inferior colliculus
nTPM: 84.3
2097 Female, age 72, unknown 103.0
1890 Male, age 53, unknown 84.1
1848 Female, age 42, unknown 78.3
2849 Male, age 72, unknown 71.8
Median raphe nucleus
nTPM: 94.9
2220 Male, age 76, midline 94.9
Periaquaductal grey, anterior
nTPM: 98.8
2502 Female, age 75, unknown 101.4
1947 Male, age 18, unknown 100.4
1795 Male, age 51, unknown 94.6
Periaquaductal grey, dorsal
nTPM: 76.1
1840 Male, age 53, unknown 83.5
2464 Female, age 72, unknown 75.8
1831 Male, age 72, unknown 73.8
2850 Male, age 76, both hemispheres 71.4
Periaquaductal grey, lateral
nTPM: 84.0
2272 Male, age 74, both hemispheres 101.8
2053 Male, age 18, unknown 79.4
2140 Male, age 76, both hemispheres 70.7
Pretectal area
nTPM: 98.9
2007 Male, age 72, unknown 117.4
1944 Female, age 72, unknown 115.2
2273 Male, age 74, both hemispheres 114.8
1817 Female, age 42, unknown 113.1
1816 Male, age 51, unknown 112.0
2224 Female, age 72, unknown 104.6
1815 Male, age 53, unknown 95.7
2667 Female, age 75, unknown 94.1
2825 Male, age 18, unknown 76.4
2316 Male, age 76, right hemisphere 72.7
2407 Male, age 75, both hemispheres 71.8
Red nucleus
nTPM: 86.3
1821 Female, age 72, unknown 105.7
2503 Female, age 72, unknown 100.0
2785 Male, age 18, unknown 97.7
2725 Female, age 75, unknown 93.7
1954 Female, age 42, unknown 92.6
1865 Male, age 51, unknown 90.0
1904 Male, age 53, unknown 85.7
2227 Male, age 72, unknown 82.4
2769 Male, age 72, unknown 81.9
2823 Male, age 76, right hemisphere 73.1
2584 Male, age 75, left hemisphere 67.5
2588 Male, age 74, left hemisphere 65.3
Substantia nigra
nTPM: 103.2
1916 Female, age 42, unknown 131.4
1851 Male, age 51, unknown 119.0
1889 Female, age 72, unknown 114.6
1941 Male, age 53, unknown 110.2
2241 Male, age 72, unknown 106.5
2409 Female, age 72, unknown 100.3
2665 Male, age 74, both hemispheres 96.3
2699 Male, age 18, unknown 88.5
2590 Female, age 75, unknown 86.3
2583 Male, age 75, right hemisphere 79.1
Superior colliculus
nTPM: 86.2
2587 Male, age 74, left hemisphere 97.6
2261 Male, age 18, unknown 97.1
1796 Male, age 53, unknown 96.2
2087 Female, age 72, unknown 96.2
2668 Female, age 75, unknown 92.8
1895 Male, age 76, right hemisphere 82.3
1913 Female, age 42, unknown 81.8
1995 Male, age 72, unknown 78.0
1839 Male, age 51, unknown 73.8
2664 Male, age 75, both hemispheres 66.3
Ventral tegmental area
nTPM: 100.5
2410 Female, age 72, unknown 130.9
1915 Female, age 42, unknown 109.4
2218 Male, age 76, both hemispheres 100.2
1942 Male, age 51, unknown 91.7
2021 Male, age 53, unknown 86.7
2223 Female, age 72, unknown 84.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 184.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.8
Samples: 139

Max nTPM: 332.7
Min nTPM: 113.6
Std nTPM: 35.6
Median nTPM: 177.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 332.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 309.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 302.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 269.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 266.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 264.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 252.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 251.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 248.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 245.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 242.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.2
Samples: 4

Max nTPM: 151.5
Min nTPM: 84.3
Sample A Female 151.5
Sample B Female 91.5
Sample C Male 93.5
Sample D Male 84.3
Midbrain
nTPM: 112.2
Samples: 4

Max nTPM: 148.9
Min nTPM: 90.3
Sample A Female 148.9
Sample B Female 103.8
Sample C Male 105.9
Sample D Male 90.3
Periaqueductal gray
nTPM: 84.8
Samples: 3

Max nTPM: 98.9
Min nTPM: 70.7
Sample B Female 84.9
Sample C Male 98.9
Sample D Male 70.7
Superior colliculi
nTPM: 122.7
Samples: 4

Max nTPM: 149.7
Min nTPM: 102.0
Sample A Female 149.7
Sample B Female 121.5
Sample C Male 117.4
Sample D Male 102.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.2
Samples: 4

Max nTPM: 136.2
Min nTPM: 123.4
Sample A Male 131.5
Sample B Male 125.5
Sample C Female 123.4
Sample D Female 136.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
68196974 Antisense, RP_040928_01_A04, Mouse strain C57BL/6J (56 days, male) 6.7

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