MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:42.9 nTPM
GTEx:45.6 nTPM
FANTOM5:120.7 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:6.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.4
2586 Male, age 75, left hemisphere 54.0
2219 Male, age 76, both hemispheres 43.5
2666 Male, age 74, left hemisphere 42.3
1833 Male, age 53, unknown 41.9
2019 Male, age 18, unknown 39.8
1830 Male, age 51, unknown 36.4
1870 Female, age 42, unknown 35.9
2828 Female, age 72, unknown 35.6
2411 Female, age 72, unknown 28.4
1827 Male, age 72, unknown 25.6
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 40.8
1828 Male, age 53, unknown 36.4
2298 Female, age 72, unknown 34.1
2016 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 25.1
Inferior colliculus
nTPM: 31.3
2849 Male, age 72, unknown 32.3
1848 Female, age 42, unknown 32.2
1890 Male, age 53, unknown 31.4
2097 Female, age 72, unknown 29.3
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 33.2
1795 Male, age 51, unknown 36.7
2502 Female, age 75, unknown 35.4
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 36.9
1831 Male, age 72, unknown 54.9
2850 Male, age 76, both hemispheres 40.9
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 23.8
Periaquaductal grey, lateral
nTPM: 40.7
2140 Male, age 76, both hemispheres 57.1
2053 Male, age 18, unknown 36.1
2272 Male, age 74, both hemispheres 28.9
Pretectal area
nTPM: 31.0
2316 Male, age 76, right hemisphere 42.2
1815 Male, age 53, unknown 36.0
1817 Female, age 42, unknown 35.8
2407 Male, age 75, both hemispheres 32.6
2667 Female, age 75, unknown 32.6
2224 Female, age 72, unknown 29.1
2825 Male, age 18, unknown 28.9
2007 Male, age 72, unknown 27.7
2273 Male, age 74, both hemispheres 26.4
1816 Male, age 51, unknown 24.8
1944 Female, age 72, unknown 24.7
Red nucleus
nTPM: 42.9
1904 Male, age 53, unknown 61.6
2584 Male, age 75, left hemisphere 47.5
1954 Female, age 42, unknown 45.7
1821 Female, age 72, unknown 45.4
2785 Male, age 18, unknown 44.4
2769 Male, age 72, unknown 43.8
2227 Male, age 72, unknown 42.9
1865 Male, age 51, unknown 40.6
2588 Male, age 74, left hemisphere 37.2
2725 Female, age 75, unknown 36.3
2823 Male, age 76, right hemisphere 35.6
2503 Female, age 72, unknown 33.8
Substantia nigra
nTPM: 40.0
2699 Male, age 18, unknown 58.7
2665 Male, age 74, both hemispheres 51.2
2583 Male, age 75, right hemisphere 46.3
2590 Female, age 75, unknown 45.2
1851 Male, age 51, unknown 43.7
2241 Male, age 72, unknown 34.4
2409 Female, age 72, unknown 32.6
1916 Female, age 42, unknown 32.2
1889 Female, age 72, unknown 28.2
1941 Male, age 53, unknown 27.0
Superior colliculus
nTPM: 36.8
1995 Male, age 72, unknown 51.3
1913 Female, age 42, unknown 44.7
1796 Male, age 53, unknown 40.5
1839 Male, age 51, unknown 37.6
1895 Male, age 76, right hemisphere 37.4
2587 Male, age 74, left hemisphere 34.0
2664 Male, age 75, both hemispheres 33.7
2668 Female, age 75, unknown 31.6
2261 Male, age 18, unknown 29.5
2087 Female, age 72, unknown 27.4
Ventral tegmental area
nTPM: 34.8
2218 Male, age 76, both hemispheres 41.5
1915 Female, age 42, unknown 36.3
1942 Male, age 51, unknown 35.1
2223 Female, age 72, unknown 34.5
2021 Male, age 53, unknown 31.0
2410 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 136.4
Min nTPM: 8.0
Std nTPM: 27.0
Median nTPM: 38.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 136.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 135.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 135.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 133.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 131.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 101.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 100.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 98.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 98.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 94.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 89.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.7
FF:10158-103A5 76 years, female 120.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.6
Sample A Female 15.8
Sample B Female 23.6
Sample C Male 13.6
Sample D Male 14.6
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 15.1
Min nTPM: 6.2
Sample A Female 15.1
Sample B Female 6.2
Sample C Male 12.7
Sample D Male 6.3
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 8.8
Min nTPM: 5.7
Sample B Female 5.7
Sample C Male 8.8
Sample D Male 7.0
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 25.0
Min nTPM: 11.7
Sample A Female 19.8
Sample B Female 25.0
Sample C Male 12.6
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.5
Sample A Male 6.0
Sample B Male 5.5
Sample C Female 5.6
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69530684 Antisense, RP_050421_04_C12, Mouse strain C57BL/6J (56 days, male) 0.2
72283802 Antisense, RP_051027_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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