HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:31.7 nTPM
GTEx:15.9 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:31.4 nTPM
Allen mouse:5.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Hippocampus
nTPM: 29.2
2529 Female, age 94, left hemisphere 38.1
1911 Female, age 85, right hemisphere 30.2
2148 Female, age 91, left hemisphere 29.0
1855 Male, age 76, left hemisphere 27.3
2621 Female, age 67, right hemisphere 25.6
1898 Male, age 80, left hemisphere 24.7
Dentate gyrus
nTPM: 26.1
2531 Female, age 67, both hemispheres 31.4
2528 Male, age 74, both hemispheres 27.2
1927 Female, age 91, both hemispheres 26.0
2246 Female, age 85, both hemispheres 25.2
2010 Male, age 76, both hemispheres 23.7
2530 Female, age 94, left hemisphere 23.2
Entorhinal gyrus
nTPM: 30.2
1787 Male, age 76, left hemisphere 37.8
1938 Female, age 85, left hemisphere 31.9
2613 Female, age 94, left hemisphere 30.9
2686 Male, age 75, right hemisphere 30.1
2117 Female, age 91, right hemisphere 27.4
2764 Male, age 80, right hemisphere 23.4
Hippocampus, CA1
nTPM: 25.9
2045 Male, age 76, both hemispheres 35.1
2082 Female, age 91, right hemisphere 29.2
1873 Female, age 85, both hemispheres 24.5
2527 Male, age 74, both hemispheres 22.4
2749 Male, age 80, left hemisphere 18.2
Hippocampus, CA2
nTPM: 24.9
1892 Male, age 76, both hemispheres 29.8
2437 Female, age 94, left hemisphere 27.7
2113 Female, age 91, right hemisphere 26.8
1963 Male, age 80, left hemisphere 23.9
1940 Female, age 85, left hemisphere 21.3
2249 Male, age 74, both hemispheres 20.0
Hippocampus, CA3
nTPM: 31.1
1867 Male, age 76, both hemispheres 44.7
1891 Female, age 85, both hemispheres 31.3
2861 Female, age 67, both hemispheres 31.3
2137 Male, age 80, left hemisphere 27.7
2620 Female, age 94, left hemisphere 27.0
2436 Male, age 74, both hemispheres 24.5
Parahippocampal cortex
nTPM: 31.7
2622 Female, age 67, right hemisphere 47.1
2018 Male, age 76, both hemispheres 40.3
2250 Female, age 67, right hemisphere 33.2
1990 Female, age 91, right hemisphere 32.2
2532 Female, age 72, left hemisphere 30.4
2693 Female, age 94, both hemispheres 28.1
1850 Male, age 80, both hemispheres 27.1
1933 Female, age 85, both hemispheres 26.6
2245 Female, age 91, both hemispheres 26.2
2692 Male, age 74, both hemispheres 25.9
Perirhinal gyrus
nTPM: 30.5
1794 Male, age 80, right hemisphere 36.9
2521 Female, age 94, right hemisphere 31.1
1847 Female, age 91, left hemisphere 30.7
1841 Female, age 85, right hemisphere 28.9
2848 Male, age 76, right hemisphere 24.9
Subiculum
nTPM: 27.5
2729 Female, age 91, right hemisphere 33.7
2619 Male, age 74, both hemispheres 29.7
2042 Male, age 76, both hemispheres 28.1
1977 Female, age 85, both hemispheres 27.6
2438 Female, age 94, left hemisphere 23.4
1901 Male, age 80, both hemispheres 22.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.9
Samples: 197

Max nTPM: 50.5
Min nTPM: 5.5
Std nTPM: 5.8
Median nTPM: 14.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 50.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 38.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 35.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 35.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 33.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 31.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 29.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 28.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 27.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 27.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 26.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.1
FF:10153-102I9 76 years, female 27.5
FF:10169-103B7 60 years, female 22.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.2
Pig sample Sample description nTPM
Subiculum
nTPM: 9.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.1
Sample A Female 12.7
Sample B Female 8.4
Sample C Male 10.0
Sample D Male 7.1
Dorsal hippocampus
nTPM: 10.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.8
Sample A Female 11.6
Sample B Female 9.9
Sample C Male 9.6
Sample D Male 8.8
Entorhinal cortex
nTPM: 8.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.6
Sample A Female 8.6
Sample B Female 9.1
Sample C Male 8.9
Sample D Male 5.6
Ventral hippocampus
nTPM: 12.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 8.8
Sample A Female 13.2
Sample B Female 8.9
Sample C Male 18.0
Sample D Male 8.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.5
Samples: 4

Max nTPM: 41.8
Min nTPM: 27.6
Sample A Male 27.8
Sample B Male 27.6
Sample C Female 28.6
Sample D Female 41.8
Hippocampal formation
nTPM: 22.6
Samples: 4

Max nTPM: 23.5
Min nTPM: 21.3
Sample A Male 23.5
Sample B Male 21.3
Sample C Female 22.8
Sample D Female 22.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
70613990 Antisense, RP_050725_01_C12, Mouse strain C57BL/6J (56 days, male) 6.3
532729 Antisense, RP_040825_01_H02, Mouse strain C57BL/6J (56 days, male) 4.9

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