MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:23.4 nTPM
GTEx:9.8 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:9.6 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2586 Male, age 75, left hemisphere 26.0
2828 Female, age 72, unknown 21.4
2219 Male, age 76, both hemispheres 19.8
1830 Male, age 51, unknown 19.0
1827 Male, age 72, unknown 18.6
2666 Male, age 74, left hemisphere 18.4
1833 Male, age 53, unknown 18.3
1870 Female, age 42, unknown 18.2
2411 Female, age 72, unknown 17.6
2019 Male, age 18, unknown 15.7
Dorsal raphe nucleus
nTPM: 20.1
2047 Male, age 72, unknown 22.3
2016 Female, age 72, unknown 21.6
2298 Female, age 72, unknown 20.1
1828 Male, age 53, unknown 19.9
2750 Male, age 76, both hemispheres 16.5
Inferior colliculus
nTPM: 18.8
2849 Male, age 72, unknown 21.1
1890 Male, age 53, unknown 18.5
1848 Female, age 42, unknown 17.8
2097 Female, age 72, unknown 17.7
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 20.3
1795 Male, age 51, unknown 22.1
2502 Female, age 75, unknown 21.3
1947 Male, age 18, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 21.1
1831 Male, age 72, unknown 23.4
1840 Male, age 53, unknown 22.6
2464 Female, age 72, unknown 19.6
2850 Male, age 76, both hemispheres 18.7
Periaquaductal grey, lateral
nTPM: 23.4
2053 Male, age 18, unknown 24.9
2272 Male, age 74, both hemispheres 23.1
2140 Male, age 76, both hemispheres 22.4
Pretectal area
nTPM: 20.9
2407 Male, age 75, both hemispheres 26.0
2273 Male, age 74, both hemispheres 23.5
2825 Male, age 18, unknown 22.7
2224 Female, age 72, unknown 21.9
2316 Male, age 76, right hemisphere 21.4
2007 Male, age 72, unknown 19.3
2667 Female, age 75, unknown 19.3
1944 Female, age 72, unknown 19.2
1815 Male, age 53, unknown 19.1
1816 Male, age 51, unknown 19.1
1817 Female, age 42, unknown 18.0
Red nucleus
nTPM: 17.5
2584 Male, age 75, left hemisphere 22.4
2823 Male, age 76, right hemisphere 20.9
2769 Male, age 72, unknown 19.2
2725 Female, age 75, unknown 17.8
2227 Male, age 72, unknown 17.5
1865 Male, age 51, unknown 16.8
2785 Male, age 18, unknown 16.8
1904 Male, age 53, unknown 16.4
2503 Female, age 72, unknown 16.4
1954 Female, age 42, unknown 15.9
1821 Female, age 72, unknown 15.2
2588 Male, age 74, left hemisphere 14.3
Substantia nigra
nTPM: 20.8
2583 Male, age 75, right hemisphere 28.0
2590 Female, age 75, unknown 25.1
1916 Female, age 42, unknown 24.6
2699 Male, age 18, unknown 24.6
1851 Male, age 51, unknown 20.4
1941 Male, age 53, unknown 19.4
2665 Male, age 74, both hemispheres 19.0
1889 Female, age 72, unknown 17.5
2241 Male, age 72, unknown 15.6
2409 Female, age 72, unknown 13.9
Superior colliculus
nTPM: 20.8
2664 Male, age 75, both hemispheres 33.0
1796 Male, age 53, unknown 22.3
2261 Male, age 18, unknown 21.3
2587 Male, age 74, left hemisphere 20.2
1839 Male, age 51, unknown 19.9
2087 Female, age 72, unknown 19.6
1913 Female, age 42, unknown 19.4
1995 Male, age 72, unknown 18.8
1895 Male, age 76, right hemisphere 17.3
2668 Female, age 75, unknown 16.4
Ventral tegmental area
nTPM: 20.0
2021 Male, age 53, unknown 21.6
2223 Female, age 72, unknown 21.1
1942 Male, age 51, unknown 21.0
1915 Female, age 42, unknown 19.8
2410 Female, age 72, unknown 18.9
2218 Male, age 76, both hemispheres 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 16.0
Min nTPM: 6.1
Std nTPM: 1.8
Median nTPM: 9.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 14.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 14.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 13.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 13.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 13.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 12.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 12.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 12.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 12.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 9.5
Min nTPM: 8.5
Sample A Female 8.8
Sample B Female 8.5
Sample C Male 8.6
Sample D Male 9.5
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 5.6
Sample A Female 14.2
Sample B Female 6.9
Sample C Male 12.1
Sample D Male 5.6
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 10.1
Min nTPM: 7.8
Sample B Female 7.8
Sample C Male 10.1
Sample D Male 7.8
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.1
Sample A Female 8.6
Sample B Female 12.0
Sample C Male 10.7
Sample D Male 8.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.9
Sample A Male 9.1
Sample B Male 8.9
Sample C Female 11.5
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70613990 Antisense, RP_050725_01_C12, Mouse strain C57BL/6J (56 days, male) 1.4
532729 Antisense, RP_040825_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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