MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:100.3 nTPM
GTEx:4.2 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Mouse:11.8 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.3
2586 Male, age 75, left hemisphere 124.7
2019 Male, age 18, unknown 96.9
2828 Female, age 72, unknown 92.9
2666 Male, age 74, left hemisphere 88.7
1827 Male, age 72, unknown 82.3
1833 Male, age 53, unknown 52.8
1830 Male, age 51, unknown 51.5
2411 Female, age 72, unknown 50.0
1870 Female, age 42, unknown 44.8
2219 Male, age 76, both hemispheres 38.7
Dorsal raphe nucleus
nTPM: 51.7
1828 Male, age 53, unknown 57.1
2047 Male, age 72, unknown 54.6
2016 Female, age 72, unknown 51.2
2298 Female, age 72, unknown 48.7
2750 Male, age 76, both hemispheres 46.9
Inferior colliculus
nTPM: 68.2
1890 Male, age 53, unknown 77.4
2097 Female, age 72, unknown 74.7
2849 Male, age 72, unknown 61.2
1848 Female, age 42, unknown 59.6
Median raphe nucleus
nTPM: 63.5
2220 Male, age 76, midline 63.5
Periaquaductal grey, anterior
nTPM: 70.5
1795 Male, age 51, unknown 86.2
1947 Male, age 18, unknown 67.9
2502 Female, age 75, unknown 57.3
Periaquaductal grey, dorsal
nTPM: 67.5
1831 Male, age 72, unknown 72.9
2850 Male, age 76, both hemispheres 69.4
1840 Male, age 53, unknown 67.6
2464 Female, age 72, unknown 60.2
Periaquaductal grey, lateral
nTPM: 72.1
2140 Male, age 76, both hemispheres 82.0
2053 Male, age 18, unknown 69.9
2272 Male, age 74, both hemispheres 64.3
Pretectal area
nTPM: 100.3
1816 Male, age 51, unknown 185.3
1944 Female, age 72, unknown 157.6
2007 Male, age 72, unknown 131.9
1817 Female, age 42, unknown 128.5
1815 Male, age 53, unknown 106.8
2667 Female, age 75, unknown 79.2
2407 Male, age 75, both hemispheres 75.9
2273 Male, age 74, both hemispheres 68.8
2316 Male, age 76, right hemisphere 60.7
2224 Female, age 72, unknown 55.4
2825 Male, age 18, unknown 53.3
Red nucleus
nTPM: 62.2
2785 Male, age 18, unknown 91.3
2588 Male, age 74, left hemisphere 89.0
2584 Male, age 75, left hemisphere 76.3
2725 Female, age 75, unknown 69.5
1954 Female, age 42, unknown 59.4
2823 Male, age 76, right hemisphere 58.8
2503 Female, age 72, unknown 58.1
1904 Male, age 53, unknown 54.7
2769 Male, age 72, unknown 51.5
1865 Male, age 51, unknown 50.2
2227 Male, age 72, unknown 49.6
1821 Female, age 72, unknown 38.3
Substantia nigra
nTPM: 68.2
1889 Female, age 72, unknown 92.7
2590 Female, age 75, unknown 86.7
2665 Male, age 74, both hemispheres 86.6
2583 Male, age 75, right hemisphere 82.0
1916 Female, age 42, unknown 68.6
2409 Female, age 72, unknown 61.6
1851 Male, age 51, unknown 59.4
1941 Male, age 53, unknown 59.3
2241 Male, age 72, unknown 45.3
2699 Male, age 18, unknown 39.8
Superior colliculus
nTPM: 82.0
2087 Female, age 72, unknown 121.9
2261 Male, age 18, unknown 108.3
1796 Male, age 53, unknown 93.1
2664 Male, age 75, both hemispheres 91.9
1995 Male, age 72, unknown 89.7
1913 Female, age 42, unknown 80.8
2668 Female, age 75, unknown 73.3
2587 Male, age 74, left hemisphere 57.8
1895 Male, age 76, right hemisphere 55.6
1839 Male, age 51, unknown 47.5
Ventral tegmental area
nTPM: 54.5
1942 Male, age 51, unknown 62.6
2223 Female, age 72, unknown 58.8
2218 Male, age 76, both hemispheres 53.0
2410 Female, age 72, unknown 52.1
1915 Female, age 42, unknown 51.6
2021 Male, age 53, unknown 48.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 15.0
Min nTPM: 1.3
Std nTPM: 1.9
Median nTPM: 3.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 15.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 8.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 8.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 7.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 7.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.5
FF:10158-103A5 76 years, female 13.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 11.0
Sample A Male 11.8
Sample B Male 12.6
Sample C Female 11.9
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
77621722 Antisense, RP_070129_04_B09, Mouse strain C57BL/6J (56 days, male) 2.4
74580966 Antisense, RP_060215_02_C04, Mouse strain C57BL/6J (56 days, male) 2.3

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