MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.1 nTPM
HPA Brain:108.7 nTPM
GTEx:45.1 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:98.5 nTPM
Mouse:104.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.7
2586 Male, age 75, left hemisphere 170.0
2019 Male, age 18, unknown 139.1
2828 Female, age 72, unknown 126.0
2666 Male, age 74, left hemisphere 108.1
1827 Male, age 72, unknown 95.0
1870 Female, age 42, unknown 94.7
1833 Male, age 53, unknown 93.7
1830 Male, age 51, unknown 92.2
2411 Female, age 72, unknown 89.5
2219 Male, age 76, both hemispheres 78.3
Dorsal raphe nucleus
nTPM: 93.5
2016 Female, age 72, unknown 106.2
1828 Male, age 53, unknown 102.2
2047 Male, age 72, unknown 94.9
2298 Female, age 72, unknown 88.5
2750 Male, age 76, both hemispheres 75.6
Inferior colliculus
nTPM: 95.2
1890 Male, age 53, unknown 102.2
1848 Female, age 42, unknown 100.0
2097 Female, age 72, unknown 91.2
2849 Male, age 72, unknown 87.7
Median raphe nucleus
nTPM: 64.0
2220 Male, age 76, midline 64.0
Periaquaductal grey, anterior
nTPM: 99.4
2502 Female, age 75, unknown 104.8
1795 Male, age 51, unknown 97.9
1947 Male, age 18, unknown 95.5
Periaquaductal grey, dorsal
nTPM: 86.2
1840 Male, age 53, unknown 91.1
1831 Male, age 72, unknown 90.5
2464 Female, age 72, unknown 86.9
2850 Male, age 76, both hemispheres 76.5
Periaquaductal grey, lateral
nTPM: 82.8
2053 Male, age 18, unknown 86.5
2272 Male, age 74, both hemispheres 83.7
2140 Male, age 76, both hemispheres 78.4
Pretectal area
nTPM: 99.5
2407 Male, age 75, both hemispheres 121.1
1817 Female, age 42, unknown 119.0
2007 Male, age 72, unknown 111.5
1816 Male, age 51, unknown 105.3
1815 Male, age 53, unknown 104.4
1944 Female, age 72, unknown 100.1
2273 Male, age 74, both hemispheres 99.2
2667 Female, age 75, unknown 93.1
2316 Male, age 76, right hemisphere 81.1
2224 Female, age 72, unknown 80.4
2825 Male, age 18, unknown 79.3
Red nucleus
nTPM: 99.2
2785 Male, age 18, unknown 116.7
2584 Male, age 75, left hemisphere 111.0
2588 Male, age 74, left hemisphere 109.3
2769 Male, age 72, unknown 99.6
2227 Male, age 72, unknown 97.5
1954 Female, age 42, unknown 97.3
1865 Male, age 51, unknown 97.0
2503 Female, age 72, unknown 96.1
1821 Female, age 72, unknown 94.1
1904 Male, age 53, unknown 92.3
2823 Male, age 76, right hemisphere 90.3
2725 Female, age 75, unknown 88.9
Substantia nigra
nTPM: 99.3
2583 Male, age 75, right hemisphere 122.7
2590 Female, age 75, unknown 108.2
2665 Male, age 74, both hemispheres 107.2
1916 Female, age 42, unknown 102.1
1851 Male, age 51, unknown 101.5
1941 Male, age 53, unknown 96.6
1889 Female, age 72, unknown 94.4
2241 Male, age 72, unknown 86.9
2699 Male, age 18, unknown 86.6
2409 Female, age 72, unknown 86.5
Superior colliculus
nTPM: 104.0
2664 Male, age 75, both hemispheres 160.2
1995 Male, age 72, unknown 116.0
2668 Female, age 75, unknown 104.1
1913 Female, age 42, unknown 101.5
2087 Female, age 72, unknown 100.0
1839 Male, age 51, unknown 96.8
2261 Male, age 18, unknown 92.8
1796 Male, age 53, unknown 92.0
2587 Male, age 74, left hemisphere 91.3
1895 Male, age 76, right hemisphere 85.2
Ventral tegmental area
nTPM: 92.3
1942 Male, age 51, unknown 104.8
2410 Female, age 72, unknown 95.9
2021 Male, age 53, unknown 95.2
1915 Female, age 42, unknown 91.0
2223 Female, age 72, unknown 89.0
2218 Male, age 76, both hemispheres 77.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 93.4
Min nTPM: 22.2
Std nTPM: 12.3
Median nTPM: 41.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 80.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 77.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 73.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 70.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 67.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 66.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.7
Samples: 4

Max nTPM: 96.4
Min nTPM: 67.8
Sample A Female 96.4
Sample B Female 67.8
Sample C Male 80.2
Sample D Male 86.3
Midbrain
nTPM: 98.5
Samples: 4

Max nTPM: 116.1
Min nTPM: 77.6
Sample A Female 103.8
Sample B Female 77.6
Sample C Male 116.1
Sample D Male 96.6
Periaqueductal gray
nTPM: 80.4
Samples: 3

Max nTPM: 83.2
Min nTPM: 74.9
Sample B Female 83.2
Sample C Male 83.1
Sample D Male 74.9
Superior colliculi
nTPM: 93.6
Samples: 4

Max nTPM: 108.5
Min nTPM: 61.8
Sample A Female 108.5
Sample B Female 61.8
Sample C Male 100.4
Sample D Male 103.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 108.0
Min nTPM: 97.8
Sample A Male 108.0
Sample B Male 97.8
Sample C Female 107.6
Sample D Female 106.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
85 Antisense, RP_Baylor_103163, Mouse strain C57BL/6J (56 days, male) 3.2
86 Antisense, RP_Baylor_103163, Mouse strain C57BL/6J (56 days, male) 0.0

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