MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:102.6 nTPM
GTEx:28.1 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:51.4 nTPM
Mouse:70.1 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.0
2586 Male, age 75, left hemisphere 101.3
2019 Male, age 18, unknown 100.2
2828 Female, age 72, unknown 96.4
1827 Male, age 72, unknown 95.8
2411 Female, age 72, unknown 93.3
2219 Male, age 76, both hemispheres 82.0
1833 Male, age 53, unknown 81.6
2666 Male, age 74, left hemisphere 80.8
1870 Female, age 42, unknown 80.2
1830 Male, age 51, unknown 78.5
Dorsal raphe nucleus
nTPM: 87.9
2298 Female, age 72, unknown 92.4
1828 Male, age 53, unknown 91.6
2047 Male, age 72, unknown 89.1
2750 Male, age 76, both hemispheres 86.9
2016 Female, age 72, unknown 79.3
Inferior colliculus
nTPM: 76.9
2097 Female, age 72, unknown 87.0
1890 Male, age 53, unknown 79.8
1848 Female, age 42, unknown 77.3
2849 Male, age 72, unknown 63.5
Median raphe nucleus
nTPM: 73.0
2220 Male, age 76, midline 73.0
Periaquaductal grey, anterior
nTPM: 90.1
1947 Male, age 18, unknown 97.0
1795 Male, age 51, unknown 91.0
2502 Female, age 75, unknown 82.4
Periaquaductal grey, dorsal
nTPM: 69.1
2464 Female, age 72, unknown 73.2
1831 Male, age 72, unknown 70.9
1840 Male, age 53, unknown 70.0
2850 Male, age 76, both hemispheres 62.3
Periaquaductal grey, lateral
nTPM: 72.3
2272 Male, age 74, both hemispheres 78.6
2053 Male, age 18, unknown 72.8
2140 Male, age 76, both hemispheres 65.5
Pretectal area
nTPM: 95.7
1816 Male, age 51, unknown 117.0
2007 Male, age 72, unknown 114.0
1817 Female, age 42, unknown 112.7
1944 Female, age 72, unknown 108.8
2667 Female, age 75, unknown 106.9
1815 Male, age 53, unknown 97.7
2316 Male, age 76, right hemisphere 82.7
2273 Male, age 74, both hemispheres 81.5
2407 Male, age 75, both hemispheres 79.7
2224 Female, age 72, unknown 77.8
2825 Male, age 18, unknown 74.1
Red nucleus
nTPM: 92.2
1821 Female, age 72, unknown 101.4
2785 Male, age 18, unknown 96.9
2823 Male, age 76, right hemisphere 94.7
2503 Female, age 72, unknown 94.4
2588 Male, age 74, left hemisphere 92.5
1865 Male, age 51, unknown 92.1
2725 Female, age 75, unknown 91.7
1954 Female, age 42, unknown 91.2
1904 Male, age 53, unknown 90.8
2769 Male, age 72, unknown 89.4
2227 Male, age 72, unknown 88.4
2584 Male, age 75, left hemisphere 82.9
Substantia nigra
nTPM: 102.6
1916 Female, age 42, unknown 130.0
1851 Male, age 51, unknown 110.7
1941 Male, age 53, unknown 106.3
2409 Female, age 72, unknown 103.7
1889 Female, age 72, unknown 103.0
2583 Male, age 75, right hemisphere 99.5
2241 Male, age 72, unknown 99.4
2590 Female, age 75, unknown 96.3
2699 Male, age 18, unknown 90.5
2665 Male, age 74, both hemispheres 86.3
Superior colliculus
nTPM: 87.3
2087 Female, age 72, unknown 103.4
2261 Male, age 18, unknown 96.3
1796 Male, age 53, unknown 92.2
2668 Female, age 75, unknown 89.0
1895 Male, age 76, right hemisphere 84.6
1995 Male, age 72, unknown 84.6
1913 Female, age 42, unknown 84.3
2664 Male, age 75, both hemispheres 81.9
2587 Male, age 74, left hemisphere 81.6
1839 Male, age 51, unknown 75.1
Ventral tegmental area
nTPM: 88.4
2410 Female, age 72, unknown 110.6
1915 Female, age 42, unknown 100.4
2218 Male, age 76, both hemispheres 85.8
1942 Male, age 51, unknown 84.0
2021 Male, age 53, unknown 76.1
2223 Female, age 72, unknown 73.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 125.8
Min nTPM: 3.8
Std nTPM: 28.5
Median nTPM: 10.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 125.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 115.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 106.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 101.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 84.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 79.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 78.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 76.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 73.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 31.4
Sample A Female 57.9
Sample B Female 36.4
Sample C Male 43.0
Sample D Male 31.4
Midbrain
nTPM: 47.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 38.4
Sample A Female 56.7
Sample B Female 39.8
Sample C Male 54.4
Sample D Male 38.4
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 38.4
Min nTPM: 32.2
Sample B Female 37.2
Sample C Male 38.4
Sample D Male 32.2
Superior colliculi
nTPM: 51.4
Samples: 4

Max nTPM: 58.4
Min nTPM: 44.2
Sample A Female 58.4
Sample B Female 49.3
Sample C Male 53.7
Sample D Male 44.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.1
Samples: 4

Max nTPM: 79.0
Min nTPM: 62.8
Sample A Male 79.0
Sample B Male 63.9
Sample C Female 62.8
Sample D Female 74.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68341412 Antisense, RP_041207_01_E06, Mouse strain C57BL/6J (56 days, male) 3.8
556 Antisense, RP_Baylor_102839, Mouse strain C57BL/6J (56 days, male) 3.2

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