MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.4 nTPM
HPA Brain:63.4 nTPM
GTEx:0.4 nTPM
FANTOM5:10.2 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.5
2219 Male, age 76, both hemispheres 69.4
1827 Male, age 72, unknown 64.6
1830 Male, age 51, unknown 64.4
2411 Female, age 72, unknown 61.2
1833 Male, age 53, unknown 61.1
2828 Female, age 72, unknown 61.0
2586 Male, age 75, left hemisphere 59.9
2019 Male, age 18, unknown 59.3
2666 Male, age 74, left hemisphere 55.9
1870 Female, age 42, unknown 48.2
Dorsal raphe nucleus
nTPM: 57.6
2047 Male, age 72, unknown 64.0
2016 Female, age 72, unknown 62.0
2750 Male, age 76, both hemispheres 61.6
1828 Male, age 53, unknown 52.2
2298 Female, age 72, unknown 48.4
Inferior colliculus
nTPM: 59.3
2849 Male, age 72, unknown 64.7
1890 Male, age 53, unknown 59.0
1848 Female, age 42, unknown 58.6
2097 Female, age 72, unknown 54.9
Median raphe nucleus
nTPM: 57.7
2220 Male, age 76, midline 57.7
Periaquaductal grey, anterior
nTPM: 55.9
1947 Male, age 18, unknown 61.7
1795 Male, age 51, unknown 53.4
2502 Female, age 75, unknown 52.6
Periaquaductal grey, dorsal
nTPM: 63.4
1831 Male, age 72, unknown 67.4
2464 Female, age 72, unknown 65.8
1840 Male, age 53, unknown 63.8
2850 Male, age 76, both hemispheres 56.6
Periaquaductal grey, lateral
nTPM: 61.7
2140 Male, age 76, both hemispheres 65.5
2053 Male, age 18, unknown 60.1
2272 Male, age 74, both hemispheres 59.6
Pretectal area
nTPM: 57.6
2316 Male, age 76, right hemisphere 67.1
2407 Male, age 75, both hemispheres 65.5
2825 Male, age 18, unknown 63.1
2667 Female, age 75, unknown 59.8
2273 Male, age 74, both hemispheres 59.6
1944 Female, age 72, unknown 56.1
2224 Female, age 72, unknown 54.9
1816 Male, age 51, unknown 54.8
1815 Male, age 53, unknown 54.1
2007 Male, age 72, unknown 51.8
1817 Female, age 42, unknown 46.2
Red nucleus
nTPM: 57.6
2588 Male, age 74, left hemisphere 65.7
2823 Male, age 76, right hemisphere 65.3
2584 Male, age 75, left hemisphere 65.0
2503 Female, age 72, unknown 61.1
1865 Male, age 51, unknown 58.4
1954 Female, age 42, unknown 58.3
2769 Male, age 72, unknown 55.9
2227 Male, age 72, unknown 55.7
1904 Male, age 53, unknown 54.8
2725 Female, age 75, unknown 52.9
2785 Male, age 18, unknown 51.4
1821 Female, age 72, unknown 46.9
Substantia nigra
nTPM: 55.8
2590 Female, age 75, unknown 64.9
2583 Male, age 75, right hemisphere 63.6
1941 Male, age 53, unknown 62.8
2409 Female, age 72, unknown 61.2
1851 Male, age 51, unknown 53.5
1916 Female, age 42, unknown 52.6
2699 Male, age 18, unknown 52.2
1889 Female, age 72, unknown 49.5
2241 Male, age 72, unknown 48.9
2665 Male, age 74, both hemispheres 48.6
Superior colliculus
nTPM: 57.6
1895 Male, age 76, right hemisphere 65.7
2664 Male, age 75, both hemispheres 64.9
2087 Female, age 72, unknown 62.0
2261 Male, age 18, unknown 58.2
1839 Male, age 51, unknown 56.3
1913 Female, age 42, unknown 54.4
1995 Male, age 72, unknown 54.3
2668 Female, age 75, unknown 53.9
2587 Male, age 74, left hemisphere 53.3
1796 Male, age 53, unknown 52.9
Ventral tegmental area
nTPM: 56.8
2021 Male, age 53, unknown 64.7
1942 Male, age 51, unknown 60.0
2410 Female, age 72, unknown 57.3
2218 Male, age 76, both hemispheres 55.2
2223 Female, age 72, unknown 53.1
1915 Female, age 42, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.4
Samples: 139

Max nTPM: 1.8
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 0.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 0.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 0.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 0.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 0.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

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