MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.7 nTPM
HPA Brain:143.0 nTPM
GTEx:65.7 nTPM
FANTOM5:172.8 Scaled Tags Per Million
Pig:54.0 nTPM
Mouse:50.1 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.0
2586 Male, age 75, left hemisphere 228.6
2828 Female, age 72, unknown 134.8
1833 Male, age 53, unknown 131.3
1830 Male, age 51, unknown 130.2
2019 Male, age 18, unknown 125.3
2411 Female, age 72, unknown 124.5
1870 Female, age 42, unknown 122.7
2666 Male, age 74, left hemisphere 110.5
1827 Male, age 72, unknown 109.2
2219 Male, age 76, both hemispheres 82.8
Dorsal raphe nucleus
nTPM: 98.7
2750 Male, age 76, both hemispheres 132.5
2047 Male, age 72, unknown 98.0
2016 Female, age 72, unknown 95.1
1828 Male, age 53, unknown 94.8
2298 Female, age 72, unknown 73.2
Inferior colliculus
nTPM: 89.0
1848 Female, age 42, unknown 94.2
1890 Male, age 53, unknown 90.7
2849 Male, age 72, unknown 88.6
2097 Female, age 72, unknown 82.6
Median raphe nucleus
nTPM: 92.8
2220 Male, age 76, midline 92.8
Periaquaductal grey, anterior
nTPM: 107.6
2502 Female, age 75, unknown 121.8
1795 Male, age 51, unknown 106.7
1947 Male, age 18, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 84.9
2464 Female, age 72, unknown 99.9
1831 Male, age 72, unknown 87.9
2850 Male, age 76, both hemispheres 84.3
1840 Male, age 53, unknown 67.6
Periaquaductal grey, lateral
nTPM: 98.6
2053 Male, age 18, unknown 105.3
2140 Male, age 76, both hemispheres 96.1
2272 Male, age 74, both hemispheres 94.5
Pretectal area
nTPM: 101.8
2316 Male, age 76, right hemisphere 129.4
2407 Male, age 75, both hemispheres 118.1
1815 Male, age 53, unknown 116.5
1817 Female, age 42, unknown 105.5
2007 Male, age 72, unknown 104.9
2825 Male, age 18, unknown 100.1
1816 Male, age 51, unknown 92.3
2667 Female, age 75, unknown 91.4
1944 Female, age 72, unknown 91.1
2224 Female, age 72, unknown 87.2
2273 Male, age 74, both hemispheres 82.8
Red nucleus
nTPM: 143.0
2823 Male, age 76, right hemisphere 161.0
1904 Male, age 53, unknown 158.0
2227 Male, age 72, unknown 150.4
2769 Male, age 72, unknown 149.6
2785 Male, age 18, unknown 146.9
1865 Male, age 51, unknown 145.2
2503 Female, age 72, unknown 144.4
2588 Male, age 74, left hemisphere 140.2
2725 Female, age 75, unknown 137.7
2584 Male, age 75, left hemisphere 132.5
1954 Female, age 42, unknown 130.1
1821 Female, age 72, unknown 120.2
Substantia nigra
nTPM: 93.1
2583 Male, age 75, right hemisphere 114.5
1851 Male, age 51, unknown 101.4
2590 Female, age 75, unknown 99.9
1889 Female, age 72, unknown 96.7
2699 Male, age 18, unknown 94.0
1941 Male, age 53, unknown 91.3
2409 Female, age 72, unknown 88.8
1916 Female, age 42, unknown 87.6
2665 Male, age 74, both hemispheres 81.7
2241 Male, age 72, unknown 74.6
Superior colliculus
nTPM: 115.5
1913 Female, age 42, unknown 147.2
1995 Male, age 72, unknown 135.2
2664 Male, age 75, both hemispheres 120.4
2261 Male, age 18, unknown 117.9
1796 Male, age 53, unknown 112.4
1839 Male, age 51, unknown 109.5
1895 Male, age 76, right hemisphere 109.2
2668 Female, age 75, unknown 106.4
2587 Male, age 74, left hemisphere 102.3
2087 Female, age 72, unknown 94.6
Ventral tegmental area
nTPM: 106.2
2223 Female, age 72, unknown 125.9
2410 Female, age 72, unknown 115.0
1942 Male, age 51, unknown 104.9
2021 Male, age 53, unknown 101.8
2218 Male, age 76, both hemispheres 101.5
1915 Female, age 42, unknown 88.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.7
Samples: 139

Max nTPM: 215.4
Min nTPM: 26.3
Std nTPM: 24.6
Median nTPM: 62.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 215.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 146.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 126.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 122.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 113.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 105.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 102.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 101.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 101.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 99.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 98.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.8
FF:10158-103A5 76 years, female 172.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 70.1
Min nTPM: 34.5
Sample A Female 50.5
Sample B Female 34.5
Sample C Male 47.9
Sample D Male 70.1
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 100.7
Min nTPM: 36.4
Sample A Female 100.7
Sample B Female 39.9
Sample C Male 39.0
Sample D Male 36.4
Periaqueductal gray
nTPM: 35.2
Samples: 3

Max nTPM: 37.9
Min nTPM: 31.8
Sample B Female 35.8
Sample C Male 31.8
Sample D Male 37.9
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 48.4
Min nTPM: 23.4
Sample A Female 42.7
Sample B Female 23.4
Sample C Male 37.9
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 53.7
Min nTPM: 44.3
Sample A Male 53.7
Sample B Male 44.3
Sample C Female 49.6
Sample D Female 53.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
75214940 Antisense, RP_060427_01_A06, Mouse strain C57BL/6J (56 days, male) 6.8

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