MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA Brain:114.5 nTPM
GTEx:28.5 nTPM
FANTOM5:196.4 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:8.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.6
2411 Female, age 72, unknown 117.6
2828 Female, age 72, unknown 100.7
1870 Female, age 42, unknown 99.9
1830 Male, age 51, unknown 95.8
1827 Male, age 72, unknown 94.3
1833 Male, age 53, unknown 90.7
2586 Male, age 75, left hemisphere 79.4
2666 Male, age 74, left hemisphere 78.8
2219 Male, age 76, both hemispheres 72.5
2019 Male, age 18, unknown 66.3
Dorsal raphe nucleus
nTPM: 101.5
2750 Male, age 76, both hemispheres 143.6
2047 Male, age 72, unknown 109.8
2298 Female, age 72, unknown 89.8
1828 Male, age 53, unknown 89.2
2016 Female, age 72, unknown 75.2
Inferior colliculus
nTPM: 64.4
1848 Female, age 42, unknown 70.8
1890 Male, age 53, unknown 64.4
2849 Male, age 72, unknown 63.1
2097 Female, age 72, unknown 59.2
Median raphe nucleus
nTPM: 114.5
2220 Male, age 76, midline 114.5
Periaquaductal grey, anterior
nTPM: 88.9
1947 Male, age 18, unknown 92.1
2502 Female, age 75, unknown 90.3
1795 Male, age 51, unknown 84.3
Periaquaductal grey, dorsal
nTPM: 61.2
2464 Female, age 72, unknown 82.1
1831 Male, age 72, unknown 63.3
1840 Male, age 53, unknown 51.4
2850 Male, age 76, both hemispheres 48.0
Periaquaductal grey, lateral
nTPM: 71.6
2053 Male, age 18, unknown 86.4
2272 Male, age 74, both hemispheres 74.5
2140 Male, age 76, both hemispheres 54.0
Pretectal area
nTPM: 78.1
2316 Male, age 76, right hemisphere 91.3
2825 Male, age 18, unknown 88.5
2667 Female, age 75, unknown 84.7
2007 Male, age 72, unknown 83.2
2407 Male, age 75, both hemispheres 82.8
1815 Male, age 53, unknown 78.2
2224 Female, age 72, unknown 75.6
1816 Male, age 51, unknown 74.6
2273 Male, age 74, both hemispheres 70.5
1944 Female, age 72, unknown 65.7
1817 Female, age 42, unknown 64.0
Red nucleus
nTPM: 88.8
2823 Male, age 76, right hemisphere 119.0
2588 Male, age 74, left hemisphere 100.8
1865 Male, age 51, unknown 96.8
2503 Female, age 72, unknown 96.6
2769 Male, age 72, unknown 91.3
2227 Male, age 72, unknown 89.7
1904 Male, age 53, unknown 86.2
1821 Female, age 72, unknown 85.8
2785 Male, age 18, unknown 82.7
1954 Female, age 42, unknown 78.6
2725 Female, age 75, unknown 71.9
2584 Male, age 75, left hemisphere 66.5
Substantia nigra
nTPM: 72.3
1916 Female, age 42, unknown 100.7
1941 Male, age 53, unknown 91.7
1851 Male, age 51, unknown 77.9
1889 Female, age 72, unknown 76.2
2590 Female, age 75, unknown 71.8
2699 Male, age 18, unknown 64.8
2583 Male, age 75, right hemisphere 62.1
2665 Male, age 74, both hemispheres 60.6
2241 Male, age 72, unknown 58.6
2409 Female, age 72, unknown 58.6
Superior colliculus
nTPM: 82.6
1913 Female, age 42, unknown 90.8
2668 Female, age 75, unknown 89.9
2261 Male, age 18, unknown 88.2
2587 Male, age 74, left hemisphere 85.2
1895 Male, age 76, right hemisphere 85.0
1796 Male, age 53, unknown 82.4
2664 Male, age 75, both hemispheres 79.1
1839 Male, age 51, unknown 77.7
2087 Female, age 72, unknown 76.0
1995 Male, age 72, unknown 71.5
Ventral tegmental area
nTPM: 89.1
2223 Female, age 72, unknown 107.1
2410 Female, age 72, unknown 93.4
2218 Male, age 76, both hemispheres 87.7
2021 Male, age 53, unknown 87.3
1915 Female, age 42, unknown 80.4
1942 Male, age 51, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 139

Max nTPM: 89.7
Min nTPM: 13.6
Std nTPM: 9.8
Median nTPM: 26.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 59.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 48.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 46.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 45.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 45.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 44.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 42.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.4
FF:10158-103A5 76 years, female 196.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.9
Samples: 4

Max nTPM: 41.5
Min nTPM: 26.0
Sample A Female 41.5
Sample B Female 26.0
Sample C Male 35.9
Sample D Male 36.1
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 66.6
Min nTPM: 27.8
Sample A Female 66.6
Sample B Female 33.2
Sample C Male 30.5
Sample D Male 27.8
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 36.3
Min nTPM: 31.8
Sample B Female 32.8
Sample C Male 36.3
Sample D Male 31.8
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 34.8
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 27.8
Sample C Male 27.6
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.4
Sample A Male 8.6
Sample B Male 7.4
Sample C Female 8.6
Sample D Female 8.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68444636 Antisense, RP_050111_02_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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