MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:27.7 nTPM
GTEx:13.0 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Mouse:15.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 39.2
2828 Female, age 72, unknown 25.3
1827 Male, age 72, unknown 22.9
2666 Male, age 74, left hemisphere 20.9
2019 Male, age 18, unknown 20.7
2219 Male, age 76, both hemispheres 16.9
1833 Male, age 53, unknown 16.2
1830 Male, age 51, unknown 15.7
2411 Female, age 72, unknown 15.5
1870 Female, age 42, unknown 15.3
Dorsal raphe nucleus
nTPM: 22.1
2298 Female, age 72, unknown 28.3
2016 Female, age 72, unknown 24.4
1828 Male, age 53, unknown 21.6
2047 Male, age 72, unknown 21.6
2750 Male, age 76, both hemispheres 14.5
Inferior colliculus
nTPM: 20.0
2097 Female, age 72, unknown 22.2
1890 Male, age 53, unknown 19.6
1848 Female, age 42, unknown 19.5
2849 Male, age 72, unknown 18.8
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 27.7
1795 Male, age 51, unknown 30.2
2502 Female, age 75, unknown 29.5
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 24.4
1840 Male, age 53, unknown 26.7
2850 Male, age 76, both hemispheres 26.3
1831 Male, age 72, unknown 23.5
2464 Female, age 72, unknown 21.3
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 29.5
2140 Male, age 76, both hemispheres 26.8
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 23.1
1816 Male, age 51, unknown 29.6
2273 Male, age 74, both hemispheres 29.2
2007 Male, age 72, unknown 26.9
1944 Female, age 72, unknown 25.8
1817 Female, age 42, unknown 25.3
2407 Male, age 75, both hemispheres 22.3
1815 Male, age 53, unknown 21.5
2224 Female, age 72, unknown 20.5
2825 Male, age 18, unknown 20.2
2667 Female, age 75, unknown 17.8
2316 Male, age 76, right hemisphere 15.4
Red nucleus
nTPM: 16.6
2785 Male, age 18, unknown 22.8
2584 Male, age 75, left hemisphere 22.6
2588 Male, age 74, left hemisphere 19.8
2769 Male, age 72, unknown 17.7
2227 Male, age 72, unknown 16.8
2503 Female, age 72, unknown 16.1
1954 Female, age 42, unknown 15.6
2725 Female, age 75, unknown 15.5
1904 Male, age 53, unknown 14.0
1865 Male, age 51, unknown 13.8
2823 Male, age 76, right hemisphere 12.4
1821 Female, age 72, unknown 12.2
Substantia nigra
nTPM: 18.1
2665 Male, age 74, both hemispheres 22.9
2583 Male, age 75, right hemisphere 21.7
2590 Female, age 75, unknown 20.9
1941 Male, age 53, unknown 20.4
1916 Female, age 42, unknown 19.0
1889 Female, age 72, unknown 18.6
1851 Male, age 51, unknown 18.2
2699 Male, age 18, unknown 16.3
2241 Male, age 72, unknown 12.6
2409 Female, age 72, unknown 10.7
Superior colliculus
nTPM: 23.3
2664 Male, age 75, both hemispheres 39.0
2261 Male, age 18, unknown 28.1
2087 Female, age 72, unknown 26.0
1796 Male, age 53, unknown 25.2
2668 Female, age 75, unknown 23.9
1995 Male, age 72, unknown 22.6
2587 Male, age 74, left hemisphere 19.8
1839 Male, age 51, unknown 18.8
1913 Female, age 42, unknown 16.4
1895 Male, age 76, right hemisphere 13.4
Ventral tegmental area
nTPM: 18.0
1942 Male, age 51, unknown 21.8
2021 Male, age 53, unknown 19.5
1915 Female, age 42, unknown 19.4
2410 Female, age 72, unknown 16.6
2218 Male, age 76, both hemispheres 16.0
2223 Female, age 72, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 22.6
Min nTPM: 4.0
Std nTPM: 4.0
Median nTPM: 13.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 22.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 22.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 21.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 20.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 20.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 20.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.7
FF:10158-103A5 76 years, female 6.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.2
Sample A Male 18.6
Sample B Male 13.2
Sample C Female 14.3
Sample D Female 17.5

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