MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.2 nTPM
HPA Brain:217.3 nTPM
GTEx:167.2 nTPM
FANTOM5:292.8 Scaled Tags Per Million
Pig:217.5 nTPM
Mouse:321.8 nTPM
Allen mouse:25.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 217.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.0
2411 Female, age 72, unknown 215.2
1870 Female, age 42, unknown 203.9
2828 Female, age 72, unknown 190.9
2586 Male, age 75, left hemisphere 181.3
1833 Male, age 53, unknown 178.3
2019 Male, age 18, unknown 177.8
1830 Male, age 51, unknown 169.6
1827 Male, age 72, unknown 164.0
2666 Male, age 74, left hemisphere 148.4
2219 Male, age 76, both hemispheres 140.8
Dorsal raphe nucleus
nTPM: 196.8
2298 Female, age 72, unknown 225.9
2047 Male, age 72, unknown 210.9
2750 Male, age 76, both hemispheres 187.9
2016 Female, age 72, unknown 180.4
1828 Male, age 53, unknown 178.7
Inferior colliculus
nTPM: 176.2
2097 Female, age 72, unknown 212.9
1848 Female, age 42, unknown 176.8
1890 Male, age 53, unknown 175.0
2849 Male, age 72, unknown 140.2
Median raphe nucleus
nTPM: 183.3
2220 Male, age 76, midline 183.3
Periaquaductal grey, anterior
nTPM: 185.4
1947 Male, age 18, unknown 191.3
1795 Male, age 51, unknown 190.9
2502 Female, age 75, unknown 173.9
Periaquaductal grey, dorsal
nTPM: 156.7
2464 Female, age 72, unknown 163.6
1840 Male, age 53, unknown 156.7
1831 Male, age 72, unknown 155.2
2850 Male, age 76, both hemispheres 151.1
Periaquaductal grey, lateral
nTPM: 182.9
2140 Male, age 76, both hemispheres 196.5
2053 Male, age 18, unknown 181.9
2272 Male, age 74, both hemispheres 170.3
Pretectal area
nTPM: 180.3
2667 Female, age 75, unknown 239.9
2273 Male, age 74, both hemispheres 205.2
2224 Female, age 72, unknown 188.6
1817 Female, age 42, unknown 187.1
2007 Male, age 72, unknown 184.2
1815 Male, age 53, unknown 172.0
1944 Female, age 72, unknown 168.6
2825 Male, age 18, unknown 165.8
1816 Male, age 51, unknown 165.6
2316 Male, age 76, right hemisphere 157.8
2407 Male, age 75, both hemispheres 148.3
Red nucleus
nTPM: 211.0
1904 Male, age 53, unknown 255.3
1821 Female, age 72, unknown 253.5
1954 Female, age 42, unknown 243.2
2227 Male, age 72, unknown 240.0
2503 Female, age 72, unknown 237.2
2769 Male, age 72, unknown 220.9
1865 Male, age 51, unknown 206.3
2785 Male, age 18, unknown 196.8
2823 Male, age 76, right hemisphere 191.0
2725 Female, age 75, unknown 188.3
2588 Male, age 74, left hemisphere 157.6
2584 Male, age 75, left hemisphere 142.5
Substantia nigra
nTPM: 201.8
1916 Female, age 42, unknown 280.4
1851 Male, age 51, unknown 264.8
2699 Male, age 18, unknown 216.1
2583 Male, age 75, right hemisphere 205.0
1889 Female, age 72, unknown 201.7
2409 Female, age 72, unknown 176.2
2241 Male, age 72, unknown 175.2
2590 Female, age 75, unknown 171.7
1941 Male, age 53, unknown 165.9
2665 Male, age 74, both hemispheres 160.6
Superior colliculus
nTPM: 171.5
1913 Female, age 42, unknown 207.8
1796 Male, age 53, unknown 194.8
1995 Male, age 72, unknown 190.0
2587 Male, age 74, left hemisphere 174.7
2087 Female, age 72, unknown 171.9
2668 Female, age 75, unknown 171.9
2261 Male, age 18, unknown 170.6
2664 Male, age 75, both hemispheres 153.8
1839 Male, age 51, unknown 145.0
1895 Male, age 76, right hemisphere 134.2
Ventral tegmental area
nTPM: 217.3
1915 Female, age 42, unknown 268.9
2410 Female, age 72, unknown 229.0
1942 Male, age 51, unknown 207.2
2223 Female, age 72, unknown 205.7
2021 Male, age 53, unknown 204.9
2218 Male, age 76, both hemispheres 188.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.2
Samples: 139

Max nTPM: 476.5
Min nTPM: 89.2
Std nTPM: 50.9
Median nTPM: 158.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 476.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 430.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 280.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 267.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 259.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 257.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 255.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 252.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 244.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 233.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 233.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 292.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.8
FF:10158-103A5 76 years, female 292.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 217.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 217.5
Samples: 4

Max nTPM: 246.5
Min nTPM: 199.3
Sample A Female 246.5
Sample B Female 199.3
Sample C Male 204.5
Sample D Male 219.8
Midbrain
nTPM: 213.5
Samples: 4

Max nTPM: 353.4
Min nTPM: 153.5
Sample A Female 353.4
Sample B Female 187.0
Sample C Male 160.0
Sample D Male 153.5
Periaqueductal gray
nTPM: 166.2
Samples: 3

Max nTPM: 174.2
Min nTPM: 152.1
Sample B Female 172.3
Sample C Male 174.2
Sample D Male 152.1
Superior colliculi
nTPM: 212.7
Samples: 4

Max nTPM: 243.3
Min nTPM: 185.6
Sample A Female 243.3
Sample B Female 231.3
Sample C Male 190.5
Sample D Male 185.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 321.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 321.8
Samples: 4

Max nTPM: 330.8
Min nTPM: 306.8
Sample A Male 330.8
Sample B Male 319.1
Sample C Female 306.8
Sample D Female 330.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.2
293263 Antisense, RP_040617_01_A10, Mouse strain C57BL/6J (56 days, male) 25.2

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