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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
11.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 11.3
Samples: 152
Max nTPM: 35.9
Min nTPM: 0.7
Std nTPM: 7.1
Median nTPM: 9.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
35.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
30.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
30.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
29.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
29.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
28.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
25.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
24.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
24.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
23.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
22.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
21.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
21.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
21.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
21.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
21.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
21.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
21.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
21.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
20.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
20.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
20.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
19.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
18.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
18.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
18.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
18.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
18.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
18.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
17.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
17.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
16.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
16.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
16.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
16.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
16.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
16.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
16.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
16.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
15.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
15.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
15.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
14.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
14.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
14.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
14.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
14.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
14.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
14.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
13.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
13.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
13.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
12.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
12.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
12.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
12.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
12.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
12.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
11.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
11.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
11.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
11.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
11.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
11.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
10.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
10.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
10.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
10.6
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
10.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
10.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
10.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
10.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
10.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
10.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
9.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
9.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
9.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
9.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
9.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
9.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
9.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
9.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
9.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
9.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
9.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
8.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
8.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
8.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
8.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
8.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
8.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
8.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
8.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
7.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
7.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
7.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
7.5
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
7.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
7.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
7.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
7.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
7.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
6.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
6.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
6.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
6.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
6.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
6.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
5.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
5.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
5.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
5.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
5.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
5.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
5.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
5.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
5.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
5.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
5.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
5.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
4.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
4.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
4.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
4.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
4.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
4.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
4.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
4.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
4.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
4.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
3.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
3.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
3.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
3.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
3.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
3.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
3.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
3.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
2.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
2.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
2.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
1.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
1.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
1.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
1.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
0.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
0.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
75.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 75.8
Samples: 4
Max nTPM: 83.2
Min nTPM: 69.2
Sample A
Male
76.9
Sample B
Male
83.2
Sample C
Female
69.2
Sample D
Female
74.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
