HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		77.792
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:77.0 nTPM
GTEx:10.3 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:65.8 nTPM
Mouse:62.8 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042012Antibody HPA060336
Glial cells Not detectedNot detected
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA060336
Hippocampal formation mean intensity 77.792
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 9.802
Molecular layer of the dentate gyrus 11.667
Granular dentate gyrus 54.222
CA1 - oriens layer 11.536
CA1 - pyramidal layer 60.278
CA1 - radiatum layer 10.968
CA2 - oriens layer 14.414
CA2 - pyramidal layer 69.074
CA2 - radiatum layer 22.974
CA3 - oriens layer 14.483
CA3 - pyramidal layer 77.792
CA3 - radiatum layer 17.357
Stratum lucidum 17.679
Lacunosum moleculare 10.605
Subiculum 25.560

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Hippocampus
nTPM: 49.1
2621 Female, age 67, right hemisphere 61.2
2148 Female, age 91, left hemisphere 54.9
1898 Male, age 80, left hemisphere 49.7
1911 Female, age 85, right hemisphere 47.2
1855 Male, age 76, left hemisphere 43.8
2529 Female, age 94, left hemisphere 38.2
Dentate gyrus
nTPM: 51.1
2531 Female, age 67, both hemispheres 68.8
1927 Female, age 91, both hemispheres 63.0
2246 Female, age 85, both hemispheres 50.7
2530 Female, age 94, left hemisphere 43.0
2528 Male, age 74, both hemispheres 41.7
2010 Male, age 76, both hemispheres 39.2
Entorhinal gyrus
nTPM: 65.8
2613 Female, age 94, left hemisphere 100.2
2764 Male, age 80, right hemisphere 70.3
2686 Male, age 75, right hemisphere 66.8
1938 Female, age 85, left hemisphere 62.9
1787 Male, age 76, left hemisphere 60.0
2117 Female, age 91, right hemisphere 34.7
Hippocampus, CA1
nTPM: 59.3
2749 Male, age 80, left hemisphere 91.7
2527 Male, age 74, both hemispheres 56.1
2082 Female, age 91, right hemisphere 54.4
2045 Male, age 76, both hemispheres 50.7
1873 Female, age 85, both hemispheres 43.4
Hippocampus, CA2
nTPM: 47.5
1892 Male, age 76, both hemispheres 52.4
2113 Female, age 91, right hemisphere 51.8
1963 Male, age 80, left hemisphere 47.8
2437 Female, age 94, left hemisphere 46.2
2249 Male, age 74, both hemispheres 44.3
1940 Female, age 85, left hemisphere 42.5
Hippocampus, CA3
nTPM: 62.6
2137 Male, age 80, left hemisphere 94.4
2620 Female, age 94, left hemisphere 82.8
2861 Female, age 67, both hemispheres 74.5
1867 Male, age 76, both hemispheres 46.6
2436 Male, age 74, both hemispheres 41.1
1891 Female, age 85, both hemispheres 36.5
Parahippocampal cortex
nTPM: 64.6
2245 Female, age 91, both hemispheres 79.0
2693 Female, age 94, both hemispheres 78.0
2622 Female, age 67, right hemisphere 75.4
2250 Female, age 67, right hemisphere 64.6
1933 Female, age 85, both hemispheres 64.1
1850 Male, age 80, both hemispheres 63.1
1990 Female, age 91, right hemisphere 60.5
2532 Female, age 72, left hemisphere 56.0
2692 Male, age 74, both hemispheres 53.4
2018 Male, age 76, both hemispheres 51.6
Perirhinal gyrus
nTPM: 77.0
1847 Female, age 91, left hemisphere 92.3
2521 Female, age 94, right hemisphere 92.3
1794 Male, age 80, right hemisphere 76.4
1841 Female, age 85, right hemisphere 64.8
2848 Male, age 76, right hemisphere 59.0
Subiculum
nTPM: 44.3
1901 Male, age 80, both hemispheres 57.0
1977 Female, age 85, both hemispheres 53.1
2619 Male, age 74, both hemispheres 49.9
2438 Female, age 94, left hemisphere 38.3
2729 Female, age 91, right hemisphere 35.6
2042 Male, age 76, both hemispheres 31.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.3
Samples: 197

Max nTPM: 39.7
Min nTPM: 0.2
Std nTPM: 7.7
Median nTPM: 9.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 39.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 35.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 34.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 32.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 29.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 29.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 28.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 27.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 27.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 26.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.5
FF:10153-102I9 76 years, female 33.7
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 65.8
Pig sample Sample description nTPM
Subiculum
nTPM: 65.8
Samples: 4

Max nTPM: 79.3
Min nTPM: 55.5
Sample A Female 79.3
Sample B Female 61.2
Sample C Male 67.3
Sample D Male 55.5
Dorsal hippocampus
nTPM: 57.0
Samples: 4

Max nTPM: 69.4
Min nTPM: 38.5
Sample A Female 64.8
Sample B Female 69.4
Sample C Male 38.5
Sample D Male 55.3
Entorhinal cortex
nTPM: 62.7
Samples: 4

Max nTPM: 71.4
Min nTPM: 46.2
Sample A Female 68.6
Sample B Female 46.2
Sample C Male 71.4
Sample D Male 64.5
Ventral hippocampus
nTPM: 59.4
Samples: 4

Max nTPM: 68.6
Min nTPM: 48.0
Sample A Female 55.4
Sample B Female 48.0
Sample C Male 65.6
Sample D Male 68.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.8
Samples: 4

Max nTPM: 66.7
Min nTPM: 57.5
Sample A Male 62.8
Sample B Male 66.7
Sample C Female 57.5
Sample D Female 64.3
Hippocampal formation
nTPM: 55.9
Samples: 4

Max nTPM: 65.2
Min nTPM: 47.4
Sample A Male 53.9
Sample B Male 65.2
Sample C Female 47.4
Sample D Female 56.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
73513597 Antisense, RP_051121_02_D04, Mouse strain C57BL/6J (56 days, male) 1.6

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