MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:36.0 nTPM
GTEx:19.9 nTPM
FANTOM5:53.6 Scaled Tags Per Million
Pig:79.3 nTPM
Mouse:22.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
2019 Male, age 18, unknown 31.9
1827 Male, age 72, unknown 30.5
1870 Female, age 42, unknown 29.6
1833 Male, age 53, unknown 29.3
2586 Male, age 75, left hemisphere 29.1
2411 Female, age 72, unknown 28.4
2828 Female, age 72, unknown 28.0
2219 Male, age 76, both hemispheres 27.7
2666 Male, age 74, left hemisphere 27.4
1830 Male, age 51, unknown 26.9
Dorsal raphe nucleus
nTPM: 29.2
2298 Female, age 72, unknown 30.4
1828 Male, age 53, unknown 30.1
2750 Male, age 76, both hemispheres 30.0
2047 Male, age 72, unknown 28.6
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 30.7
2097 Female, age 72, unknown 33.5
1890 Male, age 53, unknown 31.1
2849 Male, age 72, unknown 29.8
1848 Female, age 42, unknown 28.4
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Periaquaductal grey, anterior
nTPM: 30.9
1947 Male, age 18, unknown 33.1
2502 Female, age 75, unknown 30.2
1795 Male, age 51, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 30.2
2850 Male, age 76, both hemispheres 33.1
1840 Male, age 53, unknown 30.5
1831 Male, age 72, unknown 28.8
2464 Female, age 72, unknown 28.6
Periaquaductal grey, lateral
nTPM: 28.7
2140 Male, age 76, both hemispheres 29.8
2272 Male, age 74, both hemispheres 29.2
2053 Male, age 18, unknown 27.1
Pretectal area
nTPM: 30.7
1816 Male, age 51, unknown 33.1
2273 Male, age 74, both hemispheres 32.3
1817 Female, age 42, unknown 32.2
1815 Male, age 53, unknown 31.6
1944 Female, age 72, unknown 31.5
2007 Male, age 72, unknown 31.3
2224 Female, age 72, unknown 31.2
2407 Male, age 75, both hemispheres 30.8
2667 Female, age 75, unknown 28.7
2316 Male, age 76, right hemisphere 27.7
2825 Male, age 18, unknown 27.0
Red nucleus
nTPM: 28.7
2725 Female, age 75, unknown 31.5
1954 Female, age 42, unknown 30.5
1821 Female, age 72, unknown 29.7
2785 Male, age 18, unknown 29.5
2503 Female, age 72, unknown 28.8
2769 Male, age 72, unknown 28.2
2823 Male, age 76, right hemisphere 28.2
2227 Male, age 72, unknown 27.9
1904 Male, age 53, unknown 27.8
1865 Male, age 51, unknown 27.6
2584 Male, age 75, left hemisphere 27.4
2588 Male, age 74, left hemisphere 27.0
Substantia nigra
nTPM: 32.0
1916 Female, age 42, unknown 41.9
2241 Male, age 72, unknown 36.5
1851 Male, age 51, unknown 33.8
1889 Female, age 72, unknown 33.3
2699 Male, age 18, unknown 32.2
1941 Male, age 53, unknown 31.7
2665 Male, age 74, both hemispheres 29.6
2590 Female, age 75, unknown 28.0
2409 Female, age 72, unknown 27.2
2583 Male, age 75, right hemisphere 25.7
Superior colliculus
nTPM: 28.8
2668 Female, age 75, unknown 32.2
2087 Female, age 72, unknown 31.0
2664 Male, age 75, both hemispheres 30.5
1839 Male, age 51, unknown 29.9
1796 Male, age 53, unknown 28.4
1913 Female, age 42, unknown 28.2
2261 Male, age 18, unknown 27.8
2587 Male, age 74, left hemisphere 27.2
1995 Male, age 72, unknown 26.6
1895 Male, age 76, right hemisphere 26.4
Ventral tegmental area
nTPM: 31.5
2218 Male, age 76, both hemispheres 34.4
2410 Female, age 72, unknown 32.9
1915 Female, age 42, unknown 32.0
1942 Male, age 51, unknown 30.7
2021 Male, age 53, unknown 29.5
2223 Female, age 72, unknown 29.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.9
Samples: 139

Max nTPM: 29.0
Min nTPM: 14.4
Std nTPM: 2.6
Median nTPM: 19.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 29.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 27.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 25.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 24.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 24.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.6
FF:10158-103A5 76 years, female 53.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.3
Samples: 4

Max nTPM: 81.6
Min nTPM: 59.7
Sample A Female 81.6
Sample B Female 59.7
Sample C Male 81.3
Sample D Male 66.4
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 87.6
Min nTPM: 64.9
Sample A Female 87.6
Sample B Female 64.9
Sample C Male 87.1
Sample D Male 77.5
Periaqueductal gray
nTPM: 65.0
Samples: 3

Max nTPM: 74.0
Min nTPM: 58.2
Sample B Female 58.2
Sample C Male 74.0
Sample D Male 62.8
Superior colliculi
nTPM: 78.2
Samples: 4

Max nTPM: 95.3
Min nTPM: 59.4
Sample A Female 77.7
Sample B Female 59.4
Sample C Male 95.3
Sample D Male 80.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.7
Min nTPM: 21.9
Sample A Male 21.9
Sample B Male 22.6
Sample C Female 24.7
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
75692954 Antisense, RP_060215_02_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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