MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA Brain:25.1 nTPM
GTEx:25.6 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:13.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2019 Male, age 18, unknown 28.4
1870 Female, age 42, unknown 23.9
1830 Male, age 51, unknown 23.7
2666 Male, age 74, left hemisphere 23.3
2586 Male, age 75, left hemisphere 21.9
1833 Male, age 53, unknown 21.7
1827 Male, age 72, unknown 21.0
2828 Female, age 72, unknown 20.8
2411 Female, age 72, unknown 19.1
2219 Male, age 76, both hemispheres 18.1
Dorsal raphe nucleus
nTPM: 20.1
2750 Male, age 76, both hemispheres 23.4
2016 Female, age 72, unknown 20.8
1828 Male, age 53, unknown 19.6
2298 Female, age 72, unknown 19.4
2047 Male, age 72, unknown 17.2
Inferior colliculus
nTPM: 19.6
2849 Male, age 72, unknown 20.4
1848 Female, age 42, unknown 19.8
2097 Female, age 72, unknown 19.6
1890 Male, age 53, unknown 18.5
Median raphe nucleus
nTPM: 17.1
2220 Male, age 76, midline 17.1
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 19.1
1947 Male, age 18, unknown 18.2
1795 Male, age 51, unknown 16.8
Periaquaductal grey, dorsal
nTPM: 17.1
1831 Male, age 72, unknown 20.2
2850 Male, age 76, both hemispheres 17.8
2464 Female, age 72, unknown 16.6
1840 Male, age 53, unknown 13.8
Periaquaductal grey, lateral
nTPM: 19.4
2272 Male, age 74, both hemispheres 20.4
2053 Male, age 18, unknown 19.9
2140 Male, age 76, both hemispheres 17.9
Pretectal area
nTPM: 20.9
1817 Female, age 42, unknown 25.3
2007 Male, age 72, unknown 24.4
2667 Female, age 75, unknown 24.0
1815 Male, age 53, unknown 22.9
1816 Male, age 51, unknown 20.6
1944 Female, age 72, unknown 20.3
2407 Male, age 75, both hemispheres 20.3
2273 Male, age 74, both hemispheres 20.1
2316 Male, age 76, right hemisphere 18.1
2224 Female, age 72, unknown 17.6
2825 Male, age 18, unknown 16.3
Red nucleus
nTPM: 25.1
2785 Male, age 18, unknown 28.5
1821 Female, age 72, unknown 27.8
1865 Male, age 51, unknown 27.2
1954 Female, age 42, unknown 26.9
1904 Male, age 53, unknown 26.3
2823 Male, age 76, right hemisphere 26.3
2503 Female, age 72, unknown 26.2
2588 Male, age 74, left hemisphere 24.7
2227 Male, age 72, unknown 24.0
2769 Male, age 72, unknown 23.6
2584 Male, age 75, left hemisphere 21.0
2725 Female, age 75, unknown 18.8
Substantia nigra
nTPM: 19.6
1941 Male, age 53, unknown 23.2
2583 Male, age 75, right hemisphere 21.4
1889 Female, age 72, unknown 20.7
1916 Female, age 42, unknown 20.2
2699 Male, age 18, unknown 19.6
2590 Female, age 75, unknown 19.3
1851 Male, age 51, unknown 19.2
2665 Male, age 74, both hemispheres 18.2
2241 Male, age 72, unknown 17.0
2409 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 21.1
1913 Female, age 42, unknown 24.6
1895 Male, age 76, right hemisphere 23.7
2668 Female, age 75, unknown 22.9
2587 Male, age 74, left hemisphere 22.5
1995 Male, age 72, unknown 21.9
1839 Male, age 51, unknown 21.0
1796 Male, age 53, unknown 19.7
2664 Male, age 75, both hemispheres 18.9
2087 Female, age 72, unknown 18.6
2261 Male, age 18, unknown 17.3
Ventral tegmental area
nTPM: 18.8
2223 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 19.7
2021 Male, age 53, unknown 19.4
2410 Female, age 72, unknown 18.5
1915 Female, age 42, unknown 18.0
1942 Male, age 51, unknown 17.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 49.8
Min nTPM: 12.6
Std nTPM: 5.2
Median nTPM: 25.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 39.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 37.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 36.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 35.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 33.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.5
FF:10158-103A5 76 years, female 25.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 27.1
Min nTPM: 20.1
Sample A Female 27.1
Sample B Female 21.4
Sample C Male 20.1
Sample D Male 23.3
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 26.4
Min nTPM: 16.5
Sample A Female 26.4
Sample B Female 22.0
Sample C Male 17.1
Sample D Male 16.5
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 19.3
Min nTPM: 17.5
Sample B Female 17.8
Sample C Male 19.3
Sample D Male 17.5
Superior colliculi
nTPM: 21.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 20.7
Sample A Female 22.0
Sample B Female 22.7
Sample C Male 20.7
Sample D Male 21.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.8
Sample A Male 15.2
Sample B Male 12.7
Sample C Female 9.8
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76135645 Antisense, RP_060601_01_B02, Mouse strain C57BL/6J (56 days, male) 0.2

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