MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.4 nTPM
HPA Brain:71.5 nTPM
GTEx:74.4 nTPM
FANTOM5:130.0 Scaled Tags Per Million
Pig:91.0 nTPM
Mouse:68.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.1
2019 Male, age 18, unknown 74.4
2666 Male, age 74, left hemisphere 74.2
2411 Female, age 72, unknown 70.1
1870 Female, age 42, unknown 66.0
1833 Male, age 53, unknown 63.7
1830 Male, age 51, unknown 62.2
2586 Male, age 75, left hemisphere 60.5
1827 Male, age 72, unknown 59.2
2219 Male, age 76, both hemispheres 53.3
2828 Female, age 72, unknown 47.1
Dorsal raphe nucleus
nTPM: 65.9
2047 Male, age 72, unknown 71.3
1828 Male, age 53, unknown 67.5
2750 Male, age 76, both hemispheres 67.5
2298 Female, age 72, unknown 62.3
2016 Female, age 72, unknown 61.0
Inferior colliculus
nTPM: 61.7
2097 Female, age 72, unknown 64.1
1890 Male, age 53, unknown 63.3
1848 Female, age 42, unknown 61.0
2849 Male, age 72, unknown 58.4
Median raphe nucleus
nTPM: 69.2
2220 Male, age 76, midline 69.2
Periaquaductal grey, anterior
nTPM: 57.3
2502 Female, age 75, unknown 66.0
1947 Male, age 18, unknown 55.0
1795 Male, age 51, unknown 51.0
Periaquaductal grey, dorsal
nTPM: 60.5
1840 Male, age 53, unknown 65.1
2850 Male, age 76, both hemispheres 59.9
1831 Male, age 72, unknown 59.7
2464 Female, age 72, unknown 57.3
Periaquaductal grey, lateral
nTPM: 50.4
2053 Male, age 18, unknown 53.9
2140 Male, age 76, both hemispheres 52.2
2272 Male, age 74, both hemispheres 45.2
Pretectal area
nTPM: 60.0
1815 Male, age 53, unknown 69.1
1816 Male, age 51, unknown 69.1
2007 Male, age 72, unknown 68.4
1817 Female, age 42, unknown 68.3
1944 Female, age 72, unknown 66.9
2224 Female, age 72, unknown 60.4
2667 Female, age 75, unknown 54.4
2825 Male, age 18, unknown 53.5
2316 Male, age 76, right hemisphere 52.3
2407 Male, age 75, both hemispheres 48.9
2273 Male, age 74, both hemispheres 48.1
Red nucleus
nTPM: 65.6
1821 Female, age 72, unknown 82.2
2588 Male, age 74, left hemisphere 72.0
2725 Female, age 75, unknown 71.3
2503 Female, age 72, unknown 67.0
1954 Female, age 42, unknown 65.6
2584 Male, age 75, left hemisphere 63.9
2823 Male, age 76, right hemisphere 62.8
2769 Male, age 72, unknown 62.0
1865 Male, age 51, unknown 61.0
1904 Male, age 53, unknown 60.3
2785 Male, age 18, unknown 60.2
2227 Male, age 72, unknown 58.5
Substantia nigra
nTPM: 71.5
2241 Male, age 72, unknown 80.0
2409 Female, age 72, unknown 78.9
1889 Female, age 72, unknown 75.0
1916 Female, age 42, unknown 74.7
2665 Male, age 74, both hemispheres 73.5
2699 Male, age 18, unknown 71.8
1851 Male, age 51, unknown 71.7
1941 Male, age 53, unknown 70.1
2590 Female, age 75, unknown 62.7
2583 Male, age 75, right hemisphere 56.4
Superior colliculus
nTPM: 57.9
2587 Male, age 74, left hemisphere 65.2
1839 Male, age 51, unknown 61.2
2087 Female, age 72, unknown 61.2
1895 Male, age 76, right hemisphere 60.9
1913 Female, age 42, unknown 57.5
2668 Female, age 75, unknown 56.6
2261 Male, age 18, unknown 55.9
1995 Male, age 72, unknown 54.5
2664 Male, age 75, both hemispheres 54.5
1796 Male, age 53, unknown 51.3
Ventral tegmental area
nTPM: 65.6
2218 Male, age 76, both hemispheres 70.6
2410 Female, age 72, unknown 69.9
1915 Female, age 42, unknown 66.8
1942 Male, age 51, unknown 63.3
2223 Female, age 72, unknown 62.8
2021 Male, age 53, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.4
Samples: 139

Max nTPM: 140.3
Min nTPM: 42.2
Std nTPM: 19.3
Median nTPM: 71.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 140.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 132.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 123.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 120.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 116.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 114.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 114.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 109.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 109.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 107.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.0
FF:10158-103A5 76 years, female 130.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.2
Samples: 4

Max nTPM: 102.1
Min nTPM: 67.7
Sample A Female 102.1
Sample B Female 67.7
Sample C Male 88.1
Sample D Male 74.7
Midbrain
nTPM: 91.1
Samples: 4

Max nTPM: 113.9
Min nTPM: 74.8
Sample A Female 113.9
Sample B Female 86.7
Sample C Male 88.8
Sample D Male 74.8
Periaqueductal gray
nTPM: 71.4
Samples: 3

Max nTPM: 76.6
Min nTPM: 63.8
Sample B Female 73.8
Sample C Male 76.6
Sample D Male 63.8
Superior colliculi
nTPM: 84.8
Samples: 4

Max nTPM: 101.1
Min nTPM: 60.0
Sample A Female 95.7
Sample B Female 60.0
Sample C Male 101.1
Sample D Male 82.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.3
Samples: 4

Max nTPM: 69.9
Min nTPM: 66.9
Sample A Male 67.8
Sample B Male 66.9
Sample C Female 69.9
Sample D Female 68.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67765697 Antisense, RP_040916_01_C10, Mouse strain C57BL/6J (56 days, male) 0.0

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