MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:28.8 nTPM
GTEx:8.2 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:14.4 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2219 Male, age 76, both hemispheres 33.6
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 26.8
1830 Male, age 51, unknown 26.3
1827 Male, age 72, unknown 26.0
1870 Female, age 42, unknown 25.8
2828 Female, age 72, unknown 25.4
2019 Male, age 18, unknown 23.2
2666 Male, age 74, left hemisphere 21.8
2586 Male, age 75, left hemisphere 21.3
Dorsal raphe nucleus
nTPM: 26.2
2016 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 27.4
2750 Male, age 76, both hemispheres 26.7
2298 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 24.2
Inferior colliculus
nTPM: 27.3
1890 Male, age 53, unknown 27.7
1848 Female, age 42, unknown 27.6
2849 Male, age 72, unknown 27.0
2097 Female, age 72, unknown 26.8
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 25.1
1947 Male, age 18, unknown 27.4
2502 Female, age 75, unknown 24.0
1795 Male, age 51, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 27.5
1840 Male, age 53, unknown 28.7
2850 Male, age 76, both hemispheres 27.4
1831 Male, age 72, unknown 27.0
2464 Female, age 72, unknown 27.0
Periaquaductal grey, lateral
nTPM: 26.1
2140 Male, age 76, both hemispheres 28.0
2053 Male, age 18, unknown 26.4
2272 Male, age 74, both hemispheres 24.0
Pretectal area
nTPM: 25.5
2316 Male, age 76, right hemisphere 28.2
2224 Female, age 72, unknown 27.1
2825 Male, age 18, unknown 26.9
2273 Male, age 74, both hemispheres 26.2
2667 Female, age 75, unknown 25.5
1817 Female, age 42, unknown 25.1
2007 Male, age 72, unknown 25.0
1815 Male, age 53, unknown 24.8
1944 Female, age 72, unknown 24.6
1816 Male, age 51, unknown 23.7
2407 Male, age 75, both hemispheres 23.2
Red nucleus
nTPM: 24.6
2503 Female, age 72, unknown 27.5
2823 Male, age 76, right hemisphere 25.5
1821 Female, age 72, unknown 25.2
1865 Male, age 51, unknown 24.8
1904 Male, age 53, unknown 24.8
1954 Female, age 42, unknown 24.5
2769 Male, age 72, unknown 24.5
2227 Male, age 72, unknown 24.4
2588 Male, age 74, left hemisphere 24.3
2725 Female, age 75, unknown 23.7
2785 Male, age 18, unknown 23.4
2584 Male, age 75, left hemisphere 22.2
Substantia nigra
nTPM: 28.8
2699 Male, age 18, unknown 30.9
1916 Female, age 42, unknown 30.5
2241 Male, age 72, unknown 30.3
2665 Male, age 74, both hemispheres 30.2
1851 Male, age 51, unknown 29.2
1941 Male, age 53, unknown 29.2
2409 Female, age 72, unknown 28.9
2590 Female, age 75, unknown 28.0
1889 Female, age 72, unknown 25.8
2583 Male, age 75, right hemisphere 25.5
Superior colliculus
nTPM: 25.1
1895 Male, age 76, right hemisphere 28.7
2668 Female, age 75, unknown 27.6
1839 Male, age 51, unknown 27.3
2587 Male, age 74, left hemisphere 26.3
1913 Female, age 42, unknown 24.9
2087 Female, age 72, unknown 24.7
1796 Male, age 53, unknown 24.4
1995 Male, age 72, unknown 23.5
2261 Male, age 18, unknown 23.1
2664 Male, age 75, both hemispheres 20.2
Ventral tegmental area
nTPM: 27.3
2218 Male, age 76, both hemispheres 28.5
2410 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 27.3
1915 Female, age 42, unknown 27.1
1942 Male, age 51, unknown 26.6
2223 Female, age 72, unknown 26.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 12.3
Min nTPM: 4.8
Std nTPM: 1.4
Median nTPM: 8.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 12.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 11.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 11.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 11.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 10.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 10.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 10.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 10.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 22.8
Sample A Female 23.1
Sample B Female 22.8
Sample C Male 23.4
Sample D Male 25.3
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.0
Sample A Female 23.5
Sample B Female 23.5
Sample C Male 28.2
Sample D Male 22.0
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 23.5
Min nTPM: 18.8
Sample B Female 23.5
Sample C Male 22.1
Sample D Male 18.8
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 27.0
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 21.4
Sample C Male 27.0
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.0
Sample A Male 12.0
Sample B Male 15.8
Sample C Female 14.5
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68744582 Antisense, RP_050208_01_B10, Mouse strain C57BL/6J (56 days, male) 2.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org