MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:78.3 nTPM
GTEx:19.8 nTPM
FANTOM5:68.3 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:4.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.0
2586 Male, age 75, left hemisphere 66.8
2019 Male, age 18, unknown 58.6
1833 Male, age 53, unknown 58.5
2411 Female, age 72, unknown 57.4
1830 Male, age 51, unknown 56.4
1870 Female, age 42, unknown 54.6
2666 Male, age 74, left hemisphere 51.5
1827 Male, age 72, unknown 50.5
2828 Female, age 72, unknown 48.1
2219 Male, age 76, both hemispheres 37.6
Dorsal raphe nucleus
nTPM: 61.2
2016 Female, age 72, unknown 71.9
2298 Female, age 72, unknown 66.2
1828 Male, age 53, unknown 60.7
2047 Male, age 72, unknown 58.5
2750 Male, age 76, both hemispheres 48.6
Inferior colliculus
nTPM: 45.4
1848 Female, age 42, unknown 47.8
2849 Male, age 72, unknown 47.8
1890 Male, age 53, unknown 44.9
2097 Female, age 72, unknown 41.2
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 60.8
2502 Female, age 75, unknown 66.8
1795 Male, age 51, unknown 64.5
1947 Male, age 18, unknown 51.2
Periaquaductal grey, dorsal
nTPM: 56.1
1840 Male, age 53, unknown 64.4
2850 Male, age 76, both hemispheres 62.0
2464 Female, age 72, unknown 52.0
1831 Male, age 72, unknown 45.9
Periaquaductal grey, lateral
nTPM: 78.3
2272 Male, age 74, both hemispheres 104.1
2140 Male, age 76, both hemispheres 73.0
2053 Male, age 18, unknown 57.6
Pretectal area
nTPM: 53.4
2273 Male, age 74, both hemispheres 71.9
2667 Female, age 75, unknown 63.6
2825 Male, age 18, unknown 62.9
2224 Female, age 72, unknown 59.6
2316 Male, age 76, right hemisphere 55.5
2007 Male, age 72, unknown 51.5
2407 Male, age 75, both hemispheres 50.6
1815 Male, age 53, unknown 46.4
1817 Female, age 42, unknown 45.9
1816 Male, age 51, unknown 40.3
1944 Female, age 72, unknown 39.6
Red nucleus
nTPM: 60.0
2769 Male, age 72, unknown 69.4
2227 Male, age 72, unknown 65.6
2584 Male, age 75, left hemisphere 64.9
2785 Male, age 18, unknown 63.8
1904 Male, age 53, unknown 60.8
1821 Female, age 72, unknown 60.7
2588 Male, age 74, left hemisphere 60.7
1865 Male, age 51, unknown 59.9
2823 Male, age 76, right hemisphere 55.7
1954 Female, age 42, unknown 55.1
2503 Female, age 72, unknown 53.8
2725 Female, age 75, unknown 49.1
Substantia nigra
nTPM: 58.4
1916 Female, age 42, unknown 70.0
2699 Male, age 18, unknown 67.5
1851 Male, age 51, unknown 66.7
2590 Female, age 75, unknown 64.8
2583 Male, age 75, right hemisphere 57.8
2409 Female, age 72, unknown 53.0
1941 Male, age 53, unknown 52.3
1889 Female, age 72, unknown 50.8
2241 Male, age 72, unknown 50.6
2665 Male, age 74, both hemispheres 50.0
Superior colliculus
nTPM: 51.6
2664 Male, age 75, both hemispheres 61.8
1995 Male, age 72, unknown 58.9
1839 Male, age 51, unknown 55.4
1913 Female, age 42, unknown 54.2
1796 Male, age 53, unknown 52.7
2587 Male, age 74, left hemisphere 52.0
1895 Male, age 76, right hemisphere 49.8
2261 Male, age 18, unknown 48.8
2668 Female, age 75, unknown 41.5
2087 Female, age 72, unknown 40.7
Ventral tegmental area
nTPM: 53.2
2410 Female, age 72, unknown 62.8
2223 Female, age 72, unknown 58.2
1915 Female, age 42, unknown 57.2
2021 Male, age 53, unknown 50.2
1942 Male, age 51, unknown 48.7
2218 Male, age 76, both hemispheres 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 56.1
Min nTPM: 9.4
Std nTPM: 6.6
Median nTPM: 18.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 32.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 32.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 31.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 30.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 30.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.3
FF:10158-103A5 76 years, female 68.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.6
Sample A Female 8.7
Sample B Female 7.0
Sample C Male 6.6
Sample D Male 7.5
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.3
Sample A Female 9.2
Sample B Female 6.3
Sample C Male 6.6
Sample D Male 6.4
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 5.9
Min nTPM: 5.6
Sample B Female 5.7
Sample C Male 5.9
Sample D Male 5.6
Superior colliculi
nTPM: 7.8
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.8
Sample A Female 8.4
Sample B Female 8.4
Sample C Male 6.8
Sample D Male 7.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.5
Sample A Male 5.0
Sample B Male 4.5
Sample C Female 4.8
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76003364 Antisense, RP_060608_02_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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