MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.1 nTPM
HPA Brain:54.5 nTPM
GTEx:58.1 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:90.0 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.6
2019 Male, age 18, unknown 54.6
2666 Male, age 74, left hemisphere 52.3
2586 Male, age 75, left hemisphere 50.6
2411 Female, age 72, unknown 50.5
2828 Female, age 72, unknown 47.4
1827 Male, age 72, unknown 47.3
1870 Female, age 42, unknown 46.8
1830 Male, age 51, unknown 43.4
1833 Male, age 53, unknown 42.5
2219 Male, age 76, both hemispheres 41.1
Dorsal raphe nucleus
nTPM: 51.0
2298 Female, age 72, unknown 55.0
2750 Male, age 76, both hemispheres 54.7
2047 Male, age 72, unknown 53.9
1828 Male, age 53, unknown 50.2
2016 Female, age 72, unknown 41.3
Inferior colliculus
nTPM: 44.0
2097 Female, age 72, unknown 50.2
1848 Female, age 42, unknown 43.6
1890 Male, age 53, unknown 42.5
2849 Male, age 72, unknown 39.8
Median raphe nucleus
nTPM: 52.9
2220 Male, age 76, midline 52.9
Periaquaductal grey, anterior
nTPM: 52.4
2502 Female, age 75, unknown 56.1
1947 Male, age 18, unknown 52.8
1795 Male, age 51, unknown 48.2
Periaquaductal grey, dorsal
nTPM: 39.5
1840 Male, age 53, unknown 42.1
2464 Female, age 72, unknown 40.7
2850 Male, age 76, both hemispheres 39.8
1831 Male, age 72, unknown 35.2
Periaquaductal grey, lateral
nTPM: 40.7
2140 Male, age 76, both hemispheres 42.9
2053 Male, age 18, unknown 40.6
2272 Male, age 74, both hemispheres 38.7
Pretectal area
nTPM: 47.6
2007 Male, age 72, unknown 56.6
1816 Male, age 51, unknown 56.2
1817 Female, age 42, unknown 54.8
1944 Female, age 72, unknown 50.4
2224 Female, age 72, unknown 47.2
1815 Male, age 53, unknown 46.8
2667 Female, age 75, unknown 44.8
2825 Male, age 18, unknown 43.7
2316 Male, age 76, right hemisphere 42.9
2273 Male, age 74, both hemispheres 41.8
2407 Male, age 75, both hemispheres 37.9
Red nucleus
nTPM: 47.9
1821 Female, age 72, unknown 53.5
2785 Male, age 18, unknown 51.8
1954 Female, age 42, unknown 49.3
2227 Male, age 72, unknown 49.2
2588 Male, age 74, left hemisphere 48.9
1865 Male, age 51, unknown 48.7
2769 Male, age 72, unknown 47.6
2503 Female, age 72, unknown 47.2
2584 Male, age 75, left hemisphere 46.4
2725 Female, age 75, unknown 45.9
1904 Male, age 53, unknown 44.1
2823 Male, age 76, right hemisphere 42.5
Substantia nigra
nTPM: 54.5
1916 Female, age 42, unknown 71.7
1941 Male, age 53, unknown 61.8
1851 Male, age 51, unknown 60.1
2241 Male, age 72, unknown 59.7
2665 Male, age 74, both hemispheres 52.0
1889 Female, age 72, unknown 50.5
2409 Female, age 72, unknown 50.0
2583 Male, age 75, right hemisphere 48.8
2590 Female, age 75, unknown 46.1
2699 Male, age 18, unknown 44.4
Superior colliculus
nTPM: 45.1
2668 Female, age 75, unknown 53.6
1796 Male, age 53, unknown 50.2
2261 Male, age 18, unknown 47.0
2087 Female, age 72, unknown 46.6
1839 Male, age 51, unknown 45.9
2587 Male, age 74, left hemisphere 45.5
1913 Female, age 42, unknown 42.0
1895 Male, age 76, right hemisphere 41.1
2664 Male, age 75, both hemispheres 40.5
1995 Male, age 72, unknown 38.3
Ventral tegmental area
nTPM: 51.0
2410 Female, age 72, unknown 57.2
1915 Female, age 42, unknown 56.9
2223 Female, age 72, unknown 51.3
2218 Male, age 76, both hemispheres 49.9
2021 Male, age 53, unknown 47.3
1942 Male, age 51, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.1
Samples: 139

Max nTPM: 100.5
Min nTPM: 39.2
Std nTPM: 10.7
Median nTPM: 55.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 100.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 88.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 85.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 84.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 78.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 78.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 76.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 76.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.4
FF:10158-103A5 76 years, female 35.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.8
Samples: 4

Max nTPM: 75.7
Min nTPM: 45.4
Sample A Female 75.7
Sample B Female 48.2
Sample C Male 57.7
Sample D Male 45.4
Midbrain
nTPM: 57.6
Samples: 4

Max nTPM: 73.8
Min nTPM: 51.7
Sample A Female 73.8
Sample B Female 52.1
Sample C Male 52.8
Sample D Male 51.7
Periaqueductal gray
nTPM: 49.6
Samples: 3

Max nTPM: 55.6
Min nTPM: 45.8
Sample B Female 45.8
Sample C Male 55.6
Sample D Male 47.4
Superior colliculi
nTPM: 65.6
Samples: 4

Max nTPM: 76.1
Min nTPM: 57.8
Sample A Female 76.1
Sample B Female 57.8
Sample C Male 67.2
Sample D Male 61.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.0
Samples: 4

Max nTPM: 94.6
Min nTPM: 83.6
Sample A Male 94.6
Sample B Male 89.4
Sample C Female 83.6
Sample D Female 92.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
545095 Antisense, RP_040825_02_C07, Mouse strain C57BL/6J (56 days, male) 3.9

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