MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:34.6 nTPM
GTEx:26.3 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:76.6 nTPM
Mouse:35.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
1870 Female, age 42, unknown 38.2
2411 Female, age 72, unknown 36.9
1833 Male, age 53, unknown 30.9
2019 Male, age 18, unknown 29.8
2828 Female, age 72, unknown 28.3
1827 Male, age 72, unknown 27.4
1830 Male, age 51, unknown 27.3
2666 Male, age 74, left hemisphere 25.7
2219 Male, age 76, both hemispheres 24.5
2586 Male, age 75, left hemisphere 18.9
Dorsal raphe nucleus
nTPM: 31.9
2298 Female, age 72, unknown 39.6
2750 Male, age 76, both hemispheres 33.5
2016 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 30.1
2047 Male, age 72, unknown 25.3
Inferior colliculus
nTPM: 25.5
2097 Female, age 72, unknown 31.1
1890 Male, age 53, unknown 25.3
1848 Female, age 42, unknown 24.1
2849 Male, age 72, unknown 21.6
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Periaquaductal grey, anterior
nTPM: 32.6
2502 Female, age 75, unknown 35.1
1947 Male, age 18, unknown 33.8
1795 Male, age 51, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 26.9
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 25.2
1831 Male, age 72, unknown 24.9
1840 Male, age 53, unknown 23.2
Periaquaductal grey, lateral
nTPM: 31.1
2272 Male, age 74, both hemispheres 38.1
2140 Male, age 76, both hemispheres 27.7
2053 Male, age 18, unknown 27.3
Pretectal area
nTPM: 31.4
2273 Male, age 74, both hemispheres 39.1
2224 Female, age 72, unknown 36.5
2667 Female, age 75, unknown 36.2
1817 Female, age 42, unknown 34.8
2007 Male, age 72, unknown 33.7
1815 Male, age 53, unknown 33.3
1816 Male, age 51, unknown 32.2
1944 Female, age 72, unknown 30.4
2316 Male, age 76, right hemisphere 26.5
2825 Male, age 18, unknown 26.2
2407 Male, age 75, both hemispheres 17.0
Red nucleus
nTPM: 32.1
1821 Female, age 72, unknown 43.5
1904 Male, age 53, unknown 38.8
1954 Female, age 42, unknown 37.7
1865 Male, age 51, unknown 36.9
2769 Male, age 72, unknown 33.5
2503 Female, age 72, unknown 32.5
2823 Male, age 76, right hemisphere 32.1
2725 Female, age 75, unknown 30.9
2785 Male, age 18, unknown 30.1
2227 Male, age 72, unknown 29.9
2588 Male, age 74, left hemisphere 21.2
2584 Male, age 75, left hemisphere 18.1
Substantia nigra
nTPM: 31.3
1851 Male, age 51, unknown 39.0
1916 Female, age 42, unknown 38.8
2241 Male, age 72, unknown 35.9
1889 Female, age 72, unknown 35.0
2699 Male, age 18, unknown 32.2
1941 Male, age 53, unknown 30.0
2665 Male, age 74, both hemispheres 28.7
2590 Female, age 75, unknown 26.9
2409 Female, age 72, unknown 26.1
2583 Male, age 75, right hemisphere 20.0
Superior colliculus
nTPM: 28.2
1913 Female, age 42, unknown 36.9
1995 Male, age 72, unknown 33.9
2261 Male, age 18, unknown 32.9
2587 Male, age 74, left hemisphere 31.5
1796 Male, age 53, unknown 28.0
2087 Female, age 72, unknown 27.9
1895 Male, age 76, right hemisphere 26.7
2668 Female, age 75, unknown 25.1
1839 Male, age 51, unknown 23.7
2664 Male, age 75, both hemispheres 15.7
Ventral tegmental area
nTPM: 34.6
2410 Female, age 72, unknown 45.1
2218 Male, age 76, both hemispheres 36.1
1915 Female, age 42, unknown 34.2
2223 Female, age 72, unknown 34.2
1942 Male, age 51, unknown 29.6
2021 Male, age 53, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 63.2
Min nTPM: 14.3
Std nTPM: 6.4
Median nTPM: 25.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 34.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.5
FF:10158-103A5 76 years, female 97.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.6
Samples: 4

Max nTPM: 84.8
Min nTPM: 64.8
Sample A Female 84.8
Sample B Female 64.8
Sample C Male 78.4
Sample D Male 78.3
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 103.7
Min nTPM: 54.6
Sample A Female 103.7
Sample B Female 65.5
Sample C Male 63.2
Sample D Male 54.6
Periaqueductal gray
nTPM: 60.2
Samples: 3

Max nTPM: 62.5
Min nTPM: 57.7
Sample B Female 60.4
Sample C Male 62.5
Sample D Male 57.7
Superior colliculi
nTPM: 73.9
Samples: 4

Max nTPM: 83.2
Min nTPM: 64.5
Sample A Female 83.2
Sample B Female 77.2
Sample C Male 64.5
Sample D Male 70.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 36.8
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 35.8
Sample C Female 36.8
Sample D Female 34.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
638705 Antisense, RP_040831_02_C02, Mouse strain C57BL/6J (56 days, male) 0.2

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