HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:6.2 nTPM
HPA Brain:11.6 nTPM
GTEx:6.2 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:25.5 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029894
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Hippocampus
nTPM: 9.5
2529 Female, age 94, left hemisphere 11.9
1855 Male, age 76, left hemisphere 10.4
1898 Male, age 80, left hemisphere 10.0
2621 Female, age 67, right hemisphere 8.8
2148 Female, age 91, left hemisphere 8.7
1911 Female, age 85, right hemisphere 7.3
Dentate gyrus
nTPM: 10.7
2010 Male, age 76, both hemispheres 18.9
2531 Female, age 67, both hemispheres 10.6
2530 Female, age 94, left hemisphere 10.5
1927 Female, age 91, both hemispheres 8.8
2246 Female, age 85, both hemispheres 7.9
2528 Male, age 74, both hemispheres 7.2
Entorhinal gyrus
nTPM: 8.4
2764 Male, age 80, right hemisphere 10.3
1787 Male, age 76, left hemisphere 10.2
2117 Female, age 91, right hemisphere 9.2
1938 Female, age 85, left hemisphere 7.8
2613 Female, age 94, left hemisphere 6.9
2686 Male, age 75, right hemisphere 5.9
Hippocampus, CA1
nTPM: 11.2
2045 Male, age 76, both hemispheres 24.6
2749 Male, age 80, left hemisphere 10.0
1873 Female, age 85, both hemispheres 9.6
2527 Male, age 74, both hemispheres 6.2
2082 Female, age 91, right hemisphere 5.4
Hippocampus, CA2
nTPM: 10.1
1892 Male, age 76, both hemispheres 17.4
2437 Female, age 94, left hemisphere 10.9
1963 Male, age 80, left hemisphere 9.8
1940 Female, age 85, left hemisphere 9.5
2249 Male, age 74, both hemispheres 6.8
2113 Female, age 91, right hemisphere 6.5
Hippocampus, CA3
nTPM: 9.3
1867 Male, age 76, both hemispheres 20.2
2861 Female, age 67, both hemispheres 10.4
1891 Female, age 85, both hemispheres 7.0
2620 Female, age 94, left hemisphere 6.8
2436 Male, age 74, both hemispheres 6.0
2137 Male, age 80, left hemisphere 5.6
Parahippocampal cortex
nTPM: 9.2
2018 Male, age 76, both hemispheres 18.7
2532 Female, age 72, left hemisphere 11.5
1933 Female, age 85, both hemispheres 9.8
1850 Male, age 80, both hemispheres 9.1
2250 Female, age 67, right hemisphere 8.7
2245 Female, age 91, both hemispheres 8.6
2622 Female, age 67, right hemisphere 7.9
1990 Female, age 91, right hemisphere 7.8
2693 Female, age 94, both hemispheres 6.6
2692 Male, age 74, both hemispheres 3.6
Perirhinal gyrus
nTPM: 11.6
2848 Male, age 76, right hemisphere 15.7
1841 Female, age 85, right hemisphere 13.0
1794 Male, age 80, right hemisphere 11.8
2521 Female, age 94, right hemisphere 9.7
1847 Female, age 91, left hemisphere 7.8
Subiculum
nTPM: 9.0
2042 Male, age 76, both hemispheres 19.4
1977 Female, age 85, both hemispheres 7.6
2438 Female, age 94, left hemisphere 7.4
2729 Female, age 91, right hemisphere 7.4
1901 Male, age 80, both hemispheres 6.8
2619 Male, age 74, both hemispheres 5.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.2
Samples: 197

Max nTPM: 34.5
Min nTPM: 1.8
Std nTPM: 4.9
Median nTPM: 4.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 34.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 34.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 23.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 23.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 21.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 21.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 19.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 18.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 16.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 15.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.6
FF:10169-103B7 60 years, female 28.0
FF:10153-102I9 76 years, female 15.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Subiculum
nTPM: 5.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.3
Sample A Female 7.6
Sample B Female 4.3
Sample C Male 5.8
Sample D Male 5.8
Dorsal hippocampus
nTPM: 7.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.2
Sample A Female 7.8
Sample B Female 7.6
Sample C Male 5.2
Sample D Male 9.4
Entorhinal cortex
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.3
Sample A Female 7.1
Sample B Female 6.3
Sample C Male 6.8
Sample D Male 4.3
Ventral hippocampus
nTPM: 7.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.0
Sample A Female 7.1
Sample B Female 7.0
Sample C Male 9.6
Sample D Male 6.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 11.8
Sample A Male 31.2
Sample B Male 42.4
Sample C Female 16.4
Sample D Female 11.8
Hippocampal formation
nTPM: 15.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.6
Sample A Male 14.7
Sample B Male 14.9
Sample C Female 13.6
Sample D Female 17.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
70546006 Antisense, RP_050623_03_D08, Mouse strain C57BL/6J (56 days, male) 3.8
73931410 Antisense, RP_051214_04_E02, Mouse strain C57BL/6J (56 days, male) 2.8

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