MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:13.8 nTPM
GTEx:7.7 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:9.7 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.3
2219 Male, age 76, both hemispheres 13.6
1833 Male, age 53, unknown 13.2
2019 Male, age 18, unknown 12.8
2828 Female, age 72, unknown 12.7
1827 Male, age 72, unknown 12.6
1870 Female, age 42, unknown 12.5
2411 Female, age 72, unknown 11.7
1830 Male, age 51, unknown 11.4
2666 Male, age 74, left hemisphere 11.4
2586 Male, age 75, left hemisphere 11.1
Dorsal raphe nucleus
nTPM: 13.8
2298 Female, age 72, unknown 16.7
2750 Male, age 76, both hemispheres 14.2
2047 Male, age 72, unknown 13.3
2016 Female, age 72, unknown 12.6
1828 Male, age 53, unknown 12.4
Inferior colliculus
nTPM: 13.6
2097 Female, age 72, unknown 17.0
1848 Female, age 42, unknown 13.4
1890 Male, age 53, unknown 12.4
2849 Male, age 72, unknown 11.6
Median raphe nucleus
nTPM: 12.9
2220 Male, age 76, midline 12.9
Periaquaductal grey, anterior
nTPM: 13.0
1947 Male, age 18, unknown 13.9
2502 Female, age 75, unknown 12.7
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 11.3
2464 Female, age 72, unknown 12.6
1840 Male, age 53, unknown 11.4
1831 Male, age 72, unknown 10.7
2850 Male, age 76, both hemispheres 10.3
Periaquaductal grey, lateral
nTPM: 11.9
2272 Male, age 74, both hemispheres 12.7
2053 Male, age 18, unknown 11.9
2140 Male, age 76, both hemispheres 11.0
Pretectal area
nTPM: 13.3
2007 Male, age 72, unknown 15.4
1817 Female, age 42, unknown 15.0
1816 Male, age 51, unknown 14.8
2224 Female, age 72, unknown 14.3
2407 Male, age 75, both hemispheres 13.0
2667 Female, age 75, unknown 13.0
1815 Male, age 53, unknown 12.7
1944 Female, age 72, unknown 12.7
2273 Male, age 74, both hemispheres 12.7
2316 Male, age 76, right hemisphere 12.0
2825 Male, age 18, unknown 11.2
Red nucleus
nTPM: 12.5
2725 Female, age 75, unknown 14.7
2503 Female, age 72, unknown 14.1
1865 Male, age 51, unknown 12.9
2227 Male, age 72, unknown 12.9
2584 Male, age 75, left hemisphere 12.8
2823 Male, age 76, right hemisphere 12.7
2769 Male, age 72, unknown 12.6
1904 Male, age 53, unknown 12.5
2785 Male, age 18, unknown 11.7
1954 Female, age 42, unknown 11.3
1821 Female, age 72, unknown 11.2
2588 Male, age 74, left hemisphere 10.5
Substantia nigra
nTPM: 11.4
1916 Female, age 42, unknown 13.5
1889 Female, age 72, unknown 13.4
2241 Male, age 72, unknown 12.1
2699 Male, age 18, unknown 12.1
2583 Male, age 75, right hemisphere 11.9
1941 Male, age 53, unknown 11.7
1851 Male, age 51, unknown 11.5
2590 Female, age 75, unknown 11.2
2665 Male, age 74, both hemispheres 10.0
2409 Female, age 72, unknown 6.3
Superior colliculus
nTPM: 12.4
2087 Female, age 72, unknown 15.5
1796 Male, age 53, unknown 14.4
2587 Male, age 74, left hemisphere 13.2
1895 Male, age 76, right hemisphere 13.1
2261 Male, age 18, unknown 12.6
1913 Female, age 42, unknown 11.9
1839 Male, age 51, unknown 11.8
1995 Male, age 72, unknown 11.4
2668 Female, age 75, unknown 10.9
2664 Male, age 75, both hemispheres 9.1
Ventral tegmental area
nTPM: 12.8
2410 Female, age 72, unknown 14.0
2223 Female, age 72, unknown 12.9
1915 Female, age 42, unknown 12.8
1942 Male, age 51, unknown 12.6
2218 Male, age 76, both hemispheres 12.6
2021 Male, age 53, unknown 12.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 13.1
Min nTPM: 4.1
Std nTPM: 1.7
Median nTPM: 7.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 11.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 10.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 10.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 10.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 10.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 10.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 10.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.2
Sample A Female 25.8
Sample B Female 14.2
Sample C Male 20.1
Sample D Male 14.9
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.8
Sample A Female 15.8
Sample B Female 17.8
Sample C Male 21.1
Sample D Male 20.6
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 19.5
Min nTPM: 15.2
Sample B Female 15.2
Sample C Male 19.5
Sample D Male 17.1
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 24.0
Min nTPM: 14.6
Sample A Female 22.6
Sample B Female 14.6
Sample C Male 24.0
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.8
Sample A Male 9.9
Sample B Male 8.8
Sample C Female 10.5
Sample D Female 9.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70445550 Antisense, RP_050614_04_A11, Mouse strain C57BL/6J (56 days, male) 1.1

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