HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA Brain:26.3 nTPM
GTEx:30.8 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:24.5 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Hippocampus
nTPM: 24.1
2529 Female, age 94, left hemisphere 27.8
2621 Female, age 67, right hemisphere 26.6
2148 Female, age 91, left hemisphere 23.5
1898 Male, age 80, left hemisphere 22.4
1911 Female, age 85, right hemisphere 22.4
1855 Male, age 76, left hemisphere 22.0
Dentate gyrus
nTPM: 23.9
2530 Female, age 94, left hemisphere 26.8
2246 Female, age 85, both hemispheres 26.1
2528 Male, age 74, both hemispheres 24.4
1927 Female, age 91, both hemispheres 22.4
2531 Female, age 67, both hemispheres 22.0
2010 Male, age 76, both hemispheres 21.9
Entorhinal gyrus
nTPM: 24.9
1787 Male, age 76, left hemisphere 26.9
2764 Male, age 80, right hemisphere 26.2
1938 Female, age 85, left hemisphere 25.9
2117 Female, age 91, right hemisphere 25.6
2686 Male, age 75, right hemisphere 22.6
2613 Female, age 94, left hemisphere 22.2
Hippocampus, CA1
nTPM: 22.0
2527 Male, age 74, both hemispheres 24.1
2749 Male, age 80, left hemisphere 23.2
1873 Female, age 85, both hemispheres 22.5
2045 Male, age 76, both hemispheres 20.5
2082 Female, age 91, right hemisphere 19.6
Hippocampus, CA2
nTPM: 23.8
1892 Male, age 76, both hemispheres 26.6
2437 Female, age 94, left hemisphere 24.2
1940 Female, age 85, left hemisphere 23.8
2113 Female, age 91, right hemisphere 23.8
2249 Male, age 74, both hemispheres 23.4
1963 Male, age 80, left hemisphere 21.2
Hippocampus, CA3
nTPM: 24.5
2620 Female, age 94, left hemisphere 27.7
2137 Male, age 80, left hemisphere 24.3
1867 Male, age 76, both hemispheres 24.2
2436 Male, age 74, both hemispheres 24.2
1891 Female, age 85, both hemispheres 24.1
2861 Female, age 67, both hemispheres 22.2
Parahippocampal cortex
nTPM: 25.4
2532 Female, age 72, left hemisphere 28.7
2245 Female, age 91, both hemispheres 27.3
2250 Female, age 67, right hemisphere 27.1
2692 Male, age 74, both hemispheres 26.5
1850 Male, age 80, both hemispheres 26.0
1990 Female, age 91, right hemisphere 25.0
1933 Female, age 85, both hemispheres 24.9
2018 Male, age 76, both hemispheres 23.3
2622 Female, age 67, right hemisphere 23.1
2693 Female, age 94, both hemispheres 22.5
Perirhinal gyrus
nTPM: 26.3
2848 Male, age 76, right hemisphere 28.9
1841 Female, age 85, right hemisphere 27.2
1794 Male, age 80, right hemisphere 26.7
2521 Female, age 94, right hemisphere 25.3
1847 Female, age 91, left hemisphere 23.5
Subiculum
nTPM: 25.7
2438 Female, age 94, left hemisphere 30.8
2619 Male, age 74, both hemispheres 26.2
1977 Female, age 85, both hemispheres 25.9
2042 Male, age 76, both hemispheres 24.4
2729 Female, age 91, right hemisphere 24.1
1901 Male, age 80, both hemispheres 22.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.8
Samples: 197

Max nTPM: 53.6
Min nTPM: 18.1
Std nTPM: 5.3
Median nTPM: 30.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 53.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 46.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 44.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 43.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 42.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 40.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 39.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 39.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 39.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.9
FF:10153-102I9 76 years, female 52.1
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 79.5
Pig sample Sample description nTPM
Subiculum
nTPM: 74.3
Samples: 4

Max nTPM: 101.6
Min nTPM: 60.1
Sample A Female 101.6
Sample B Female 66.8
Sample C Male 68.6
Sample D Male 60.1
Dorsal hippocampus
nTPM: 79.5
Samples: 4

Max nTPM: 99.2
Min nTPM: 64.0
Sample A Female 99.2
Sample B Female 75.3
Sample C Male 79.3
Sample D Male 64.0
Entorhinal cortex
nTPM: 73.0
Samples: 4

Max nTPM: 85.2
Min nTPM: 64.8
Sample A Female 85.2
Sample B Female 72.3
Sample C Male 64.8
Sample D Male 69.6
Ventral hippocampus
nTPM: 78.2
Samples: 4

Max nTPM: 91.8
Min nTPM: 55.0
Sample A Female 78.4
Sample B Female 55.0
Sample C Male 91.8
Sample D Male 87.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.8
Sample A Male 26.2
Sample B Male 27.4
Sample C Female 23.5
Sample D Female 20.8
Hippocampal formation
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.8
Sample A Male 20.8
Sample B Male 25.0
Sample C Female 22.4
Sample D Female 25.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
80341089 Antisense, RP_071018_01_C05, Mouse strain C57BL/6J (56 days, male) 1.1

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