MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA Brain:28.8 nTPM
GTEx:32.3 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:91.0 nTPM
Mouse:21.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
1827 Male, age 72, unknown 30.6
1870 Female, age 42, unknown 30.2
1833 Male, age 53, unknown 29.8
2219 Male, age 76, both hemispheres 29.2
2828 Female, age 72, unknown 28.8
1830 Male, age 51, unknown 27.7
2411 Female, age 72, unknown 25.5
2666 Male, age 74, left hemisphere 25.2
2019 Male, age 18, unknown 24.3
2586 Male, age 75, left hemisphere 23.6
Dorsal raphe nucleus
nTPM: 24.1
2750 Male, age 76, both hemispheres 27.8
1828 Male, age 53, unknown 24.7
2016 Female, age 72, unknown 23.6
2298 Female, age 72, unknown 23.4
2047 Male, age 72, unknown 21.1
Inferior colliculus
nTPM: 27.5
2849 Male, age 72, unknown 31.1
2097 Female, age 72, unknown 28.0
1848 Female, age 42, unknown 27.0
1890 Male, age 53, unknown 24.1
Median raphe nucleus
nTPM: 28.8
2220 Male, age 76, midline 28.8
Periaquaductal grey, anterior
nTPM: 25.7
1947 Male, age 18, unknown 28.4
2502 Female, age 75, unknown 24.8
1795 Male, age 51, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 25.6
2850 Male, age 76, both hemispheres 26.1
1840 Male, age 53, unknown 25.9
1831 Male, age 72, unknown 25.1
2464 Female, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 25.1
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 24.3
Pretectal area
nTPM: 27.8
2667 Female, age 75, unknown 31.8
1817 Female, age 42, unknown 31.4
1815 Male, age 53, unknown 30.8
1816 Male, age 51, unknown 29.8
2007 Male, age 72, unknown 29.8
2224 Female, age 72, unknown 27.7
2825 Male, age 18, unknown 27.2
2407 Male, age 75, both hemispheres 25.9
2273 Male, age 74, both hemispheres 24.6
2316 Male, age 76, right hemisphere 23.8
1944 Female, age 72, unknown 22.9
Red nucleus
nTPM: 27.7
1821 Female, age 72, unknown 29.7
2823 Male, age 76, right hemisphere 29.7
1865 Male, age 51, unknown 29.4
2725 Female, age 75, unknown 29.4
2503 Female, age 72, unknown 29.3
1904 Male, age 53, unknown 28.8
2769 Male, age 72, unknown 27.9
2227 Male, age 72, unknown 27.8
1954 Female, age 42, unknown 27.6
2588 Male, age 74, left hemisphere 26.4
2785 Male, age 18, unknown 24.6
2584 Male, age 75, left hemisphere 22.3
Substantia nigra
nTPM: 26.5
2699 Male, age 18, unknown 31.0
1916 Female, age 42, unknown 29.7
2409 Female, age 72, unknown 29.4
1889 Female, age 72, unknown 27.8
1851 Male, age 51, unknown 26.9
2665 Male, age 74, both hemispheres 26.4
1941 Male, age 53, unknown 25.5
2583 Male, age 75, right hemisphere 24.3
2590 Female, age 75, unknown 22.0
2241 Male, age 72, unknown 21.9
Superior colliculus
nTPM: 27.0
1913 Female, age 42, unknown 28.6
2587 Male, age 74, left hemisphere 28.3
1839 Male, age 51, unknown 28.0
2668 Female, age 75, unknown 27.2
1995 Male, age 72, unknown 27.0
2261 Male, age 18, unknown 26.4
2087 Female, age 72, unknown 26.3
1796 Male, age 53, unknown 26.0
1895 Male, age 76, right hemisphere 26.0
2664 Male, age 75, both hemispheres 26.0
Ventral tegmental area
nTPM: 26.1
2218 Male, age 76, both hemispheres 30.7
2223 Female, age 72, unknown 28.4
1915 Female, age 42, unknown 27.1
2021 Male, age 53, unknown 24.0
2410 Female, age 72, unknown 23.7
1942 Male, age 51, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.3
Samples: 139

Max nTPM: 54.7
Min nTPM: 18.8
Std nTPM: 5.1
Median nTPM: 31.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 54.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 40.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 40.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 39.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 39.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.5
Samples: 4

Max nTPM: 103.1
Min nTPM: 69.4
Sample A Female 103.1
Sample B Female 69.4
Sample C Male 98.1
Sample D Male 75.5
Midbrain
nTPM: 89.7
Samples: 4

Max nTPM: 100.7
Min nTPM: 80.2
Sample A Female 100.7
Sample B Female 85.9
Sample C Male 80.2
Sample D Male 92.1
Periaqueductal gray
nTPM: 79.7
Samples: 3

Max nTPM: 86.6
Min nTPM: 75.2
Sample B Female 75.2
Sample C Male 86.6
Sample D Male 77.3
Superior colliculi
nTPM: 91.0
Samples: 4

Max nTPM: 115.6
Min nTPM: 64.9
Sample A Female 115.6
Sample B Female 64.9
Sample C Male 84.5
Sample D Male 98.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.7
Sample A Male 24.4
Sample B Male 16.7
Sample C Female 21.0
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
80341089 Antisense, RP_071018_01_C05, Mouse strain C57BL/6J (56 days, male) 0.5

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