MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA Brain:13.5 nTPM
GTEx:31.4 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:72.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
1870 Female, age 42, unknown 17.0
2019 Male, age 18, unknown 12.7
1833 Male, age 53, unknown 12.1
1827 Male, age 72, unknown 12.0
2219 Male, age 76, both hemispheres 11.6
2411 Female, age 72, unknown 11.2
2586 Male, age 75, left hemisphere 11.0
2828 Female, age 72, unknown 10.9
1830 Male, age 51, unknown 9.9
2666 Male, age 74, left hemisphere 8.3
Dorsal raphe nucleus
nTPM: 13.5
2298 Female, age 72, unknown 19.1
2047 Male, age 72, unknown 12.9
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 11.6
2016 Female, age 72, unknown 10.9
Inferior colliculus
nTPM: 11.8
1848 Female, age 42, unknown 12.9
2097 Female, age 72, unknown 12.3
1890 Male, age 53, unknown 11.8
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 11.8
1947 Male, age 18, unknown 14.1
2502 Female, age 75, unknown 11.4
1795 Male, age 51, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 10.8
2850 Male, age 76, both hemispheres 11.9
1840 Male, age 53, unknown 11.4
2464 Female, age 72, unknown 10.9
1831 Male, age 72, unknown 9.0
Periaquaductal grey, lateral
nTPM: 11.6
2053 Male, age 18, unknown 12.2
2272 Male, age 74, both hemispheres 11.9
2140 Male, age 76, both hemispheres 10.6
Pretectal area
nTPM: 11.9
1816 Male, age 51, unknown 15.0
2224 Female, age 72, unknown 14.6
2007 Male, age 72, unknown 14.1
1815 Male, age 53, unknown 13.0
2273 Male, age 74, both hemispheres 12.2
1944 Female, age 72, unknown 12.0
1817 Female, age 42, unknown 11.1
2667 Female, age 75, unknown 10.5
2316 Male, age 76, right hemisphere 10.3
2825 Male, age 18, unknown 9.9
2407 Male, age 75, both hemispheres 7.8
Red nucleus
nTPM: 11.9
1821 Female, age 72, unknown 15.5
1954 Female, age 42, unknown 13.8
2725 Female, age 75, unknown 13.2
1865 Male, age 51, unknown 12.8
2785 Male, age 18, unknown 12.2
2227 Male, age 72, unknown 11.9
2823 Male, age 76, right hemisphere 11.6
2503 Female, age 72, unknown 11.5
2769 Male, age 72, unknown 11.5
1904 Male, age 53, unknown 11.1
2584 Male, age 75, left hemisphere 9.0
2588 Male, age 74, left hemisphere 9.0
Substantia nigra
nTPM: 13.1
2241 Male, age 72, unknown 17.0
1916 Female, age 42, unknown 15.5
1851 Male, age 51, unknown 15.1
2409 Female, age 72, unknown 14.3
1889 Female, age 72, unknown 13.5
1941 Male, age 53, unknown 13.1
2665 Male, age 74, both hemispheres 11.9
2699 Male, age 18, unknown 11.0
2590 Female, age 75, unknown 10.6
2583 Male, age 75, right hemisphere 8.8
Superior colliculus
nTPM: 11.4
2668 Female, age 75, unknown 13.8
1895 Male, age 76, right hemisphere 13.3
1913 Female, age 42, unknown 13.1
1796 Male, age 53, unknown 12.8
2587 Male, age 74, left hemisphere 12.2
2087 Female, age 72, unknown 11.4
2261 Male, age 18, unknown 10.7
1839 Male, age 51, unknown 10.0
1995 Male, age 72, unknown 9.6
2664 Male, age 75, both hemispheres 7.1
Ventral tegmental area
nTPM: 13.4
2410 Female, age 72, unknown 17.7
1915 Female, age 42, unknown 14.2
2218 Male, age 76, both hemispheres 12.8
1942 Male, age 51, unknown 12.2
2223 Female, age 72, unknown 12.0
2021 Male, age 53, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.4
Samples: 139

Max nTPM: 64.7
Min nTPM: 16.2
Std nTPM: 8.3
Median nTPM: 30.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 64.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 61.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 51.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 49.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 45.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 45.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 44.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.8
Sample A Female 11.1
Sample B Female 11.9
Sample C Male 10.9
Sample D Male 8.8
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 13.0
Sample C Male 10.6
Sample D Male 10.1
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.2
Min nTPM: 8.2
Sample B Female 13.2
Sample C Male 8.2
Sample D Male 10.9
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 12.2
Min nTPM: 6.9
Sample A Female 9.6
Sample B Female 6.9
Sample C Male 10.1
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.7
Samples: 4

Max nTPM: 74.6
Min nTPM: 70.2
Sample A Male 74.6
Sample B Male 72.7
Sample C Female 73.2
Sample D Female 70.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68523318 Antisense, RP_050118_02_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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