MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.1 nTPM
HPA Brain:8.9 nTPM
GTEx:2.1 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:13.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.0
2219 Male, age 76, both hemispheres 9.0
1827 Male, age 72, unknown 8.5
2411 Female, age 72, unknown 7.7
2828 Female, age 72, unknown 7.3
1833 Male, age 53, unknown 6.8
1830 Male, age 51, unknown 6.6
1870 Female, age 42, unknown 6.5
2019 Male, age 18, unknown 6.0
2666 Male, age 74, left hemisphere 6.0
2586 Male, age 75, left hemisphere 5.3
Dorsal raphe nucleus
nTPM: 6.4
2750 Male, age 76, both hemispheres 8.1
2298 Female, age 72, unknown 6.7
1828 Male, age 53, unknown 6.3
2047 Male, age 72, unknown 6.2
2016 Female, age 72, unknown 4.5
Inferior colliculus
nTPM: 6.3
2097 Female, age 72, unknown 6.6
1848 Female, age 42, unknown 6.5
1890 Male, age 53, unknown 6.2
2849 Male, age 72, unknown 5.8
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Periaquaductal grey, anterior
nTPM: 8.5
1947 Male, age 18, unknown 10.3
1795 Male, age 51, unknown 7.6
2502 Female, age 75, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 5.9
1831 Male, age 72, unknown 7.1
2464 Female, age 72, unknown 5.9
1840 Male, age 53, unknown 5.4
2850 Male, age 76, both hemispheres 5.3
Periaquaductal grey, lateral
nTPM: 5.1
2272 Male, age 74, both hemispheres 5.5
2053 Male, age 18, unknown 5.1
2140 Male, age 76, both hemispheres 4.7
Pretectal area
nTPM: 6.8
1816 Male, age 51, unknown 8.0
1944 Female, age 72, unknown 8.0
1815 Male, age 53, unknown 7.3
1817 Female, age 42, unknown 7.3
2007 Male, age 72, unknown 7.2
2667 Female, age 75, unknown 6.9
2825 Male, age 18, unknown 6.8
2407 Male, age 75, both hemispheres 6.6
2273 Male, age 74, both hemispheres 5.7
2224 Female, age 72, unknown 5.4
2316 Male, age 76, right hemisphere 5.1
Red nucleus
nTPM: 6.4
2588 Male, age 74, left hemisphere 7.7
1865 Male, age 51, unknown 7.3
1821 Female, age 72, unknown 7.0
2584 Male, age 75, left hemisphere 6.9
2227 Male, age 72, unknown 6.4
2503 Female, age 72, unknown 6.4
2725 Female, age 75, unknown 6.2
2823 Male, age 76, right hemisphere 6.2
1954 Female, age 42, unknown 6.1
2769 Male, age 72, unknown 6.0
1904 Male, age 53, unknown 5.7
2785 Male, age 18, unknown 4.9
Substantia nigra
nTPM: 7.2
1941 Male, age 53, unknown 9.0
1916 Female, age 42, unknown 8.4
2241 Male, age 72, unknown 7.4
2590 Female, age 75, unknown 7.4
1851 Male, age 51, unknown 7.0
2409 Female, age 72, unknown 7.0
1889 Female, age 72, unknown 6.8
2699 Male, age 18, unknown 6.7
2583 Male, age 75, right hemisphere 6.4
2665 Male, age 74, both hemispheres 5.4
Superior colliculus
nTPM: 7.0
2261 Male, age 18, unknown 8.5
1895 Male, age 76, right hemisphere 8.0
2087 Female, age 72, unknown 7.6
2664 Male, age 75, both hemispheres 7.6
1796 Male, age 53, unknown 7.5
2668 Female, age 75, unknown 7.5
2587 Male, age 74, left hemisphere 6.6
1913 Female, age 42, unknown 6.5
1839 Male, age 51, unknown 5.7
1995 Male, age 72, unknown 4.8
Ventral tegmental area
nTPM: 6.9
2218 Male, age 76, both hemispheres 8.0
2410 Female, age 72, unknown 7.7
1942 Male, age 51, unknown 7.2
2223 Female, age 72, unknown 6.8
1915 Female, age 42, unknown 6.2
2021 Male, age 53, unknown 5.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.1
Samples: 139

Max nTPM: 7.2
Min nTPM: 0.7
Std nTPM: 0.9
Median nTPM: 2.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 3.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 3.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 3.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 3.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 3.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.8
FF:10158-103A5 76 years, female 5.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.0
Sample A Female 6.7
Sample B Female 4.0
Sample C Male 6.9
Sample D Male 5.4
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 6.3
Sample A Female 6.5
Sample B Female 6.3
Sample C Male 16.6
Sample D Male 10.4
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.3
Sample B Female 5.9
Sample C Male 6.5
Sample D Male 5.3
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 14.7
Min nTPM: 7.0
Sample A Female 8.5
Sample B Female 7.0
Sample C Male 14.7
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.3
Sample A Male 13.4
Sample B Male 13.3
Sample C Female 14.5
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70717977 Antisense, RP_050419_03_B07, Mouse strain C57BL/6J (56 days, male) 0.2

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