MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.4 nTPM
HPA Brain:95.3 nTPM
GTEx:42.4 nTPM
FANTOM5:115.1 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:68.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.2
2586 Male, age 75, left hemisphere 136.0
2019 Male, age 18, unknown 126.2
2666 Male, age 74, left hemisphere 89.5
1827 Male, age 72, unknown 80.6
1833 Male, age 53, unknown 76.4
2828 Female, age 72, unknown 75.8
2411 Female, age 72, unknown 74.3
1830 Male, age 51, unknown 72.5
1870 Female, age 42, unknown 55.5
2219 Male, age 76, both hemispheres 55.1
Dorsal raphe nucleus
nTPM: 54.0
2750 Male, age 76, both hemispheres 61.4
1828 Male, age 53, unknown 61.2
2016 Female, age 72, unknown 51.7
2047 Male, age 72, unknown 49.4
2298 Female, age 72, unknown 46.2
Inferior colliculus
nTPM: 58.8
2849 Male, age 72, unknown 63.6
2097 Female, age 72, unknown 63.3
1848 Female, age 42, unknown 54.5
1890 Male, age 53, unknown 54.1
Median raphe nucleus
nTPM: 43.1
2220 Male, age 76, midline 43.1
Periaquaductal grey, anterior
nTPM: 60.3
2502 Female, age 75, unknown 72.3
1795 Male, age 51, unknown 61.2
1947 Male, age 18, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 54.0
1831 Male, age 72, unknown 63.2
2464 Female, age 72, unknown 62.4
2850 Male, age 76, both hemispheres 46.5
1840 Male, age 53, unknown 43.7
Periaquaductal grey, lateral
nTPM: 50.3
2272 Male, age 74, both hemispheres 57.9
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 35.9
Pretectal area
nTPM: 95.3
1817 Female, age 42, unknown 167.1
2007 Male, age 72, unknown 155.7
1816 Male, age 51, unknown 135.5
1944 Female, age 72, unknown 131.8
1815 Male, age 53, unknown 128.9
2667 Female, age 75, unknown 64.5
2407 Male, age 75, both hemispheres 63.4
2273 Male, age 74, both hemispheres 51.8
2316 Male, age 76, right hemisphere 51.7
2224 Female, age 72, unknown 50.1
2825 Male, age 18, unknown 47.7
Red nucleus
nTPM: 86.3
2785 Male, age 18, unknown 127.3
2588 Male, age 74, left hemisphere 113.9
2823 Male, age 76, right hemisphere 88.9
1865 Male, age 51, unknown 87.7
1954 Female, age 42, unknown 82.4
1821 Female, age 72, unknown 81.7
1904 Male, age 53, unknown 79.9
2584 Male, age 75, left hemisphere 79.5
2725 Female, age 75, unknown 78.6
2503 Female, age 72, unknown 78.5
2769 Male, age 72, unknown 69.2
2227 Male, age 72, unknown 68.4
Substantia nigra
nTPM: 68.5
1889 Female, age 72, unknown 107.9
2583 Male, age 75, right hemisphere 102.8
1941 Male, age 53, unknown 85.6
2590 Female, age 75, unknown 74.2
2665 Male, age 74, both hemispheres 70.9
1851 Male, age 51, unknown 60.6
2699 Male, age 18, unknown 53.0
2409 Female, age 72, unknown 49.2
1916 Female, age 42, unknown 48.5
2241 Male, age 72, unknown 32.4
Superior colliculus
nTPM: 83.8
1995 Male, age 72, unknown 113.3
1913 Female, age 42, unknown 106.7
2087 Female, age 72, unknown 102.3
2664 Male, age 75, both hemispheres 88.2
2668 Female, age 75, unknown 83.1
2261 Male, age 18, unknown 81.4
2587 Male, age 74, left hemisphere 75.1
1796 Male, age 53, unknown 65.0
1839 Male, age 51, unknown 63.1
1895 Male, age 76, right hemisphere 59.9
Ventral tegmental area
nTPM: 52.6
2410 Female, age 72, unknown 81.3
2223 Female, age 72, unknown 52.0
2218 Male, age 76, both hemispheres 47.7
1915 Female, age 42, unknown 46.7
1942 Male, age 51, unknown 46.3
2021 Male, age 53, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 81.9
Min nTPM: 17.7
Std nTPM: 13.5
Median nTPM: 40.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 81.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 80.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 80.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 68.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 67.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 67.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 67.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.1
FF:10158-103A5 76 years, female 115.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 72.0
Min nTPM: 31.1
Sample A Female 58.2
Sample B Female 31.1
Sample C Male 46.9
Sample D Male 72.0
Midbrain
nTPM: 60.4
Samples: 4

Max nTPM: 91.5
Min nTPM: 44.0
Sample A Female 91.5
Sample B Female 56.4
Sample C Male 49.6
Sample D Male 44.0
Periaqueductal gray
nTPM: 40.9
Samples: 3

Max nTPM: 48.5
Min nTPM: 36.4
Sample B Female 48.5
Sample C Male 36.4
Sample D Male 37.7
Superior colliculi
nTPM: 58.7
Samples: 4

Max nTPM: 77.8
Min nTPM: 30.2
Sample A Female 64.4
Sample B Female 30.2
Sample C Male 77.8
Sample D Male 62.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 73.1
Min nTPM: 65.1
Sample A Male 65.1
Sample B Male 65.6
Sample C Female 73.1
Sample D Female 69.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73496905 Antisense, RP_051019_04_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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