MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA Brain:20.1 nTPM
GTEx:1.8 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:0.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1833 Male, age 53, unknown 14.0
2019 Male, age 18, unknown 12.9
2828 Female, age 72, unknown 12.8
2586 Male, age 75, left hemisphere 12.0
1830 Male, age 51, unknown 11.9
1827 Male, age 72, unknown 11.8
2411 Female, age 72, unknown 11.8
2219 Male, age 76, both hemispheres 11.3
1870 Female, age 42, unknown 9.6
2666 Male, age 74, left hemisphere 9.2
Dorsal raphe nucleus
nTPM: 15.8
2298 Female, age 72, unknown 22.7
2016 Female, age 72, unknown 21.0
1828 Male, age 53, unknown 14.7
2047 Male, age 72, unknown 11.7
2750 Male, age 76, both hemispheres 8.7
Inferior colliculus
nTPM: 10.5
2097 Female, age 72, unknown 10.8
2849 Male, age 72, unknown 10.7
1890 Male, age 53, unknown 10.6
1848 Female, age 42, unknown 9.9
Median raphe nucleus
nTPM: 8.3
2220 Male, age 76, midline 8.3
Periaquaductal grey, anterior
nTPM: 14.2
1795 Male, age 51, unknown 17.9
1947 Male, age 18, unknown 13.5
2502 Female, age 75, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 17.5
2850 Male, age 76, both hemispheres 25.8
1840 Male, age 53, unknown 16.1
1831 Male, age 72, unknown 15.1
2464 Female, age 72, unknown 13.1
Periaquaductal grey, lateral
nTPM: 20.1
2272 Male, age 74, both hemispheres 28.0
2140 Male, age 76, both hemispheres 20.1
2053 Male, age 18, unknown 12.4
Pretectal area
nTPM: 13.5
2273 Male, age 74, both hemispheres 27.2
2224 Female, age 72, unknown 15.6
2667 Female, age 75, unknown 14.7
2407 Male, age 75, both hemispheres 14.0
2316 Male, age 76, right hemisphere 13.1
2825 Male, age 18, unknown 12.3
2007 Male, age 72, unknown 11.1
1817 Female, age 42, unknown 10.5
1815 Male, age 53, unknown 10.4
1816 Male, age 51, unknown 10.4
1944 Female, age 72, unknown 9.5
Red nucleus
nTPM: 11.1
2769 Male, age 72, unknown 13.5
2785 Male, age 18, unknown 12.4
2823 Male, age 76, right hemisphere 11.9
2725 Female, age 75, unknown 11.7
1904 Male, age 53, unknown 11.5
1865 Male, age 51, unknown 11.2
1954 Female, age 42, unknown 10.7
2584 Male, age 75, left hemisphere 10.4
1821 Female, age 72, unknown 10.3
2503 Female, age 72, unknown 10.2
2588 Male, age 74, left hemisphere 9.4
2227 Male, age 72, unknown 9.3
Substantia nigra
nTPM: 11.0
2409 Female, age 72, unknown 19.2
2241 Male, age 72, unknown 11.4
2590 Female, age 75, unknown 11.4
2699 Male, age 18, unknown 11.4
1851 Male, age 51, unknown 10.9
1941 Male, age 53, unknown 10.3
1889 Female, age 72, unknown 10.2
2583 Male, age 75, right hemisphere 9.5
1916 Female, age 42, unknown 8.7
2665 Male, age 74, both hemispheres 7.2
Superior colliculus
nTPM: 12.6
1995 Male, age 72, unknown 18.1
2261 Male, age 18, unknown 15.8
2664 Male, age 75, both hemispheres 13.6
1913 Female, age 42, unknown 13.2
2587 Male, age 74, left hemisphere 12.7
2668 Female, age 75, unknown 11.9
1796 Male, age 53, unknown 10.8
1895 Male, age 76, right hemisphere 10.1
2087 Female, age 72, unknown 10.1
1839 Male, age 51, unknown 9.5
Ventral tegmental area
nTPM: 10.8
2021 Male, age 53, unknown 13.1
1942 Male, age 51, unknown 12.7
1915 Female, age 42, unknown 10.2
2223 Female, age 72, unknown 9.9
2218 Male, age 76, both hemispheres 9.8
2410 Female, age 72, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.8
Samples: 139

Max nTPM: 7.5
Min nTPM: 0.1
Std nTPM: 0.8
Median nTPM: 1.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 4.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 3.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 3.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 3.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 3.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 3.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 8.1
Sample C Male 6.4
Sample D Male 6.8
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 5.7
Min nTPM: 5.4
Sample A Female 5.5
Sample B Female 5.4
Sample C Male 5.7
Sample D Male 5.6
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.3
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 9.3
Sample D Male 9.1
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 10.6
Sample C Male 5.6
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.1
Sample A Male 2.1
Sample B Male 0.3
Sample C Female 0.7
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74076144 Antisense, RP_051219_02_G12, Mouse strain C57BL/6J (56 days, male) 0.0

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