MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.8 nTPM
HPA Brain:166.4 nTPM
GTEx:138.8 nTPM
FANTOM5:185.0 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:113.8 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 166.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.8
2411 Female, age 72, unknown 107.7
1870 Female, age 42, unknown 95.6
1827 Male, age 72, unknown 89.0
2828 Female, age 72, unknown 76.4
2219 Male, age 76, both hemispheres 70.4
1833 Male, age 53, unknown 67.6
1830 Male, age 51, unknown 64.2
2666 Male, age 74, left hemisphere 61.7
2019 Male, age 18, unknown 43.6
2586 Male, age 75, left hemisphere 31.7
Dorsal raphe nucleus
nTPM: 74.5
2750 Male, age 76, both hemispheres 96.9
2298 Female, age 72, unknown 86.9
2047 Male, age 72, unknown 84.7
1828 Male, age 53, unknown 54.1
2016 Female, age 72, unknown 50.2
Inferior colliculus
nTPM: 54.7
2097 Female, age 72, unknown 71.5
1848 Female, age 42, unknown 53.2
1890 Male, age 53, unknown 50.7
2849 Male, age 72, unknown 43.3
Median raphe nucleus
nTPM: 106.1
2220 Male, age 76, midline 106.1
Periaquaductal grey, anterior
nTPM: 166.4
1947 Male, age 18, unknown 278.6
1795 Male, age 51, unknown 149.2
2502 Female, age 75, unknown 71.4
Periaquaductal grey, dorsal
nTPM: 49.9
1840 Male, age 53, unknown 54.3
2464 Female, age 72, unknown 52.2
2850 Male, age 76, both hemispheres 51.3
1831 Male, age 72, unknown 41.6
Periaquaductal grey, lateral
nTPM: 58.8
2272 Male, age 74, both hemispheres 69.9
2053 Male, age 18, unknown 65.2
2140 Male, age 76, both hemispheres 41.3
Pretectal area
nTPM: 70.4
1815 Male, age 53, unknown 95.7
2825 Male, age 18, unknown 91.9
1816 Male, age 51, unknown 86.6
1817 Female, age 42, unknown 85.4
2273 Male, age 74, both hemispheres 71.6
2224 Female, age 72, unknown 67.5
2007 Male, age 72, unknown 67.3
2667 Female, age 75, unknown 60.0
1944 Female, age 72, unknown 57.9
2316 Male, age 76, right hemisphere 47.7
2407 Male, age 75, both hemispheres 42.8
Red nucleus
nTPM: 59.8
2725 Female, age 75, unknown 94.4
1821 Female, age 72, unknown 77.6
2584 Male, age 75, left hemisphere 76.8
1904 Male, age 53, unknown 62.4
2588 Male, age 74, left hemisphere 57.7
2823 Male, age 76, right hemisphere 57.4
2503 Female, age 72, unknown 54.2
1865 Male, age 51, unknown 52.8
1954 Female, age 42, unknown 51.2
2227 Male, age 72, unknown 48.8
2769 Male, age 72, unknown 48.2
2785 Male, age 18, unknown 35.8
Substantia nigra
nTPM: 84.5
2241 Male, age 72, unknown 136.2
1916 Female, age 42, unknown 114.6
2409 Female, age 72, unknown 110.1
1851 Male, age 51, unknown 108.6
2590 Female, age 75, unknown 95.7
1889 Female, age 72, unknown 86.1
2583 Male, age 75, right hemisphere 66.7
1941 Male, age 53, unknown 46.5
2699 Male, age 18, unknown 40.7
2665 Male, age 74, both hemispheres 39.8
Superior colliculus
nTPM: 72.4
1796 Male, age 53, unknown 117.4
2261 Male, age 18, unknown 105.4
2587 Male, age 74, left hemisphere 101.4
1895 Male, age 76, right hemisphere 78.9
2668 Female, age 75, unknown 76.4
1913 Female, age 42, unknown 62.3
1839 Male, age 51, unknown 57.5
1995 Male, age 72, unknown 51.9
2087 Female, age 72, unknown 45.7
2664 Male, age 75, both hemispheres 27.1
Ventral tegmental area
nTPM: 80.5
2410 Female, age 72, unknown 99.9
2223 Female, age 72, unknown 98.0
2218 Male, age 76, both hemispheres 83.0
1915 Female, age 42, unknown 82.0
2021 Male, age 53, unknown 63.2
1942 Male, age 51, unknown 56.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 138.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.8
Samples: 139

Max nTPM: 379.4
Min nTPM: 33.7
Std nTPM: 65.6
Median nTPM: 130.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 379.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 338.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 316.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 287.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 284.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 273.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 272.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 254.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 238.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 234.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 234.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 185.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 185.0
FF:10158-103A5 76 years, female 185.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 52.0
Min nTPM: 23.2
Sample A Female 39.7
Sample B Female 36.8
Sample C Male 52.0
Sample D Male 23.2
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 84.6
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 35.3
Sample C Male 41.4
Sample D Male 84.6
Periaqueductal gray
nTPM: 42.7
Samples: 3

Max nTPM: 49.1
Min nTPM: 33.8
Sample B Female 33.8
Sample C Male 49.1
Sample D Male 45.1
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 44.2
Min nTPM: 21.4
Sample A Female 44.2
Sample B Female 21.4
Sample C Male 24.7
Sample D Male 33.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 116.4
Min nTPM: 112.0
Sample A Male 112.0
Sample B Male 116.4
Sample C Female 114.3
Sample D Female 112.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
69117449 Antisense, RP_050330_01_B08, Mouse strain C57BL/6J (56 days, male) 12.5
963 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 5.1
964 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 2.1

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