HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:88.1 nTPM
GTEx:10.3 nTPM
FANTOM5:64.3 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:24.7 nTPM
Allen mouse:8.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042734Antibody HPA048572
Glial cells Not detectedNot detected
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.1
Sample id Sample description nTPM
Hippocampus
nTPM: 88.1
2529 Female, age 94, left hemisphere 93.3
2148 Female, age 91, left hemisphere 92.7
2621 Female, age 67, right hemisphere 88.2
1911 Female, age 85, right hemisphere 88.0
1855 Male, age 76, left hemisphere 85.4
1898 Male, age 80, left hemisphere 81.3
Dentate gyrus
nTPM: 82.0
2530 Female, age 94, left hemisphere 88.1
2528 Male, age 74, both hemispheres 84.2
2010 Male, age 76, both hemispheres 84.1
1927 Female, age 91, both hemispheres 83.3
2246 Female, age 85, both hemispheres 77.6
2531 Female, age 67, both hemispheres 74.7
Entorhinal gyrus
nTPM: 87.3
2613 Female, age 94, left hemisphere 91.6
2764 Male, age 80, right hemisphere 90.4
1938 Female, age 85, left hemisphere 90.1
2117 Female, age 91, right hemisphere 89.9
2686 Male, age 75, right hemisphere 82.9
1787 Male, age 76, left hemisphere 78.7
Hippocampus, CA1
nTPM: 86.8
2749 Male, age 80, left hemisphere 101.0
1873 Female, age 85, both hemispheres 95.4
2527 Male, age 74, both hemispheres 82.2
2045 Male, age 76, both hemispheres 79.3
2082 Female, age 91, right hemisphere 76.2
Hippocampus, CA2
nTPM: 84.8
2249 Male, age 74, both hemispheres 96.0
1963 Male, age 80, left hemisphere 93.0
1940 Female, age 85, left hemisphere 87.1
2113 Female, age 91, right hemisphere 81.2
1892 Male, age 76, both hemispheres 78.8
2437 Female, age 94, left hemisphere 72.8
Hippocampus, CA3
nTPM: 86.1
2620 Female, age 94, left hemisphere 97.4
1891 Female, age 85, both hemispheres 89.4
2861 Female, age 67, both hemispheres 84.9
2137 Male, age 80, left hemisphere 83.5
1867 Male, age 76, both hemispheres 82.1
2436 Male, age 74, both hemispheres 79.5
Parahippocampal cortex
nTPM: 82.2
2622 Female, age 67, right hemisphere 86.3
1933 Female, age 85, both hemispheres 85.9
2532 Female, age 72, left hemisphere 84.6
1990 Female, age 91, right hemisphere 83.3
2692 Male, age 74, both hemispheres 83.2
1850 Male, age 80, both hemispheres 81.8
2250 Female, age 67, right hemisphere 80.8
2245 Female, age 91, both hemispheres 80.6
2018 Male, age 76, both hemispheres 79.1
2693 Female, age 94, both hemispheres 75.9
Perirhinal gyrus
nTPM: 78.5
1847 Female, age 91, left hemisphere 83.1
1841 Female, age 85, right hemisphere 82.3
1794 Male, age 80, right hemisphere 76.7
2848 Male, age 76, right hemisphere 75.9
2521 Female, age 94, right hemisphere 74.4
Subiculum
nTPM: 87.7
1901 Male, age 80, both hemispheres 95.1
2042 Male, age 76, both hemispheres 91.1
2729 Female, age 91, right hemisphere 90.1
1977 Female, age 85, both hemispheres 85.6
2619 Male, age 74, both hemispheres 85.6
2438 Female, age 94, left hemisphere 78.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.3
Samples: 197

Max nTPM: 19.5
Min nTPM: 5.0
Std nTPM: 2.2
Median nTPM: 9.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 19.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 16.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 16.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 15.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 15.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 15.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 15.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 14.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 14.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 14.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.3
FF:10153-102I9 76 years, female 92.3
FF:10169-103B7 60 years, female 36.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.4
Pig sample Sample description nTPM
Subiculum
nTPM: 54.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 51.1
Sample A Female 62.2
Sample B Female 51.1
Sample C Male 53.8
Sample D Male 51.7
Dorsal hippocampus
nTPM: 52.9
Samples: 4

Max nTPM: 57.0
Min nTPM: 47.3
Sample A Female 57.0
Sample B Female 53.6
Sample C Male 53.8
Sample D Male 47.3
Entorhinal cortex
nTPM: 57.4
Samples: 4

Max nTPM: 60.0
Min nTPM: 56.3
Sample A Female 60.0
Sample B Female 56.7
Sample C Male 56.4
Sample D Male 56.3
Ventral hippocampus
nTPM: 55.5
Samples: 4

Max nTPM: 63.6
Min nTPM: 45.8
Sample A Female 55.6
Sample B Female 45.8
Sample C Male 63.6
Sample D Male 56.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 20.9
Sample A Male 23.5
Sample B Male 21.2
Sample C Female 20.9
Sample D Female 33.4
Hippocampal formation
nTPM: 18.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 13.5
Sample A Male 13.5
Sample B Male 21.6
Sample C Female 25.0
Sample D Female 15.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.8
69174559 Antisense, RP_050329_03_A08, Mouse strain C57BL/6J (56 days, male) 8.8

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