MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:120.1 nTPM
GTEx:11.1 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:19.6 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.6
2019 Male, age 18, unknown 116.1
2586 Male, age 75, left hemisphere 116.0
1833 Male, age 53, unknown 113.3
1830 Male, age 51, unknown 110.5
1870 Female, age 42, unknown 105.7
2411 Female, age 72, unknown 104.3
2828 Female, age 72, unknown 104.3
2219 Male, age 76, both hemispheres 96.7
2666 Male, age 74, left hemisphere 94.8
1827 Male, age 72, unknown 94.0
Dorsal raphe nucleus
nTPM: 95.5
2750 Male, age 76, both hemispheres 120.7
2047 Male, age 72, unknown 94.1
2016 Female, age 72, unknown 93.1
1828 Male, age 53, unknown 91.8
2298 Female, age 72, unknown 77.6
Inferior colliculus
nTPM: 95.5
1890 Male, age 53, unknown 103.7
1848 Female, age 42, unknown 98.7
2849 Male, age 72, unknown 93.2
2097 Female, age 72, unknown 86.5
Median raphe nucleus
nTPM: 89.4
2220 Male, age 76, midline 89.4
Periaquaductal grey, anterior
nTPM: 94.3
1947 Male, age 18, unknown 101.0
2502 Female, age 75, unknown 96.5
1795 Male, age 51, unknown 85.5
Periaquaductal grey, dorsal
nTPM: 86.6
2464 Female, age 72, unknown 94.2
1840 Male, age 53, unknown 87.8
1831 Male, age 72, unknown 83.5
2850 Male, age 76, both hemispheres 80.9
Periaquaductal grey, lateral
nTPM: 94.9
2272 Male, age 74, both hemispheres 111.1
2140 Male, age 76, both hemispheres 87.4
2053 Male, age 18, unknown 86.2
Pretectal area
nTPM: 95.7
2407 Male, age 75, both hemispheres 105.8
2316 Male, age 76, right hemisphere 101.6
2007 Male, age 72, unknown 100.1
2273 Male, age 74, both hemispheres 98.0
1815 Male, age 53, unknown 97.9
1817 Female, age 42, unknown 97.9
2667 Female, age 75, unknown 94.4
1816 Male, age 51, unknown 91.9
1944 Female, age 72, unknown 90.1
2825 Male, age 18, unknown 87.8
2224 Female, age 72, unknown 87.1
Red nucleus
nTPM: 120.1
2227 Male, age 72, unknown 135.5
1904 Male, age 53, unknown 133.4
1865 Male, age 51, unknown 130.0
2588 Male, age 74, left hemisphere 127.4
2769 Male, age 72, unknown 126.1
1954 Female, age 42, unknown 125.7
2785 Male, age 18, unknown 125.2
1821 Female, age 72, unknown 121.5
2503 Female, age 72, unknown 112.9
2823 Male, age 76, right hemisphere 111.3
2584 Male, age 75, left hemisphere 104.1
2725 Female, age 75, unknown 88.1
Substantia nigra
nTPM: 96.9
2590 Female, age 75, unknown 111.0
2583 Male, age 75, right hemisphere 107.9
2409 Female, age 72, unknown 103.7
1916 Female, age 42, unknown 101.1
1851 Male, age 51, unknown 97.4
1941 Male, age 53, unknown 92.3
1889 Female, age 72, unknown 91.4
2241 Male, age 72, unknown 90.2
2699 Male, age 18, unknown 89.9
2665 Male, age 74, both hemispheres 84.1
Superior colliculus
nTPM: 96.3
2668 Female, age 75, unknown 111.6
1895 Male, age 76, right hemisphere 104.7
2261 Male, age 18, unknown 98.7
1913 Female, age 42, unknown 98.5
2587 Male, age 74, left hemisphere 97.8
1995 Male, age 72, unknown 97.3
1839 Male, age 51, unknown 92.8
1796 Male, age 53, unknown 89.1
2087 Female, age 72, unknown 88.5
2664 Male, age 75, both hemispheres 84.0
Ventral tegmental area
nTPM: 96.7
2223 Female, age 72, unknown 113.9
2410 Female, age 72, unknown 112.5
1942 Male, age 51, unknown 98.2
2218 Male, age 76, both hemispheres 87.5
1915 Female, age 42, unknown 86.3
2021 Male, age 53, unknown 81.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 23.8
Min nTPM: 5.7
Std nTPM: 3.1
Median nTPM: 10.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 20.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 19.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.9
FF:10158-103A5 76 years, female 109.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.1
Samples: 4

Max nTPM: 66.6
Min nTPM: 51.3
Sample A Female 59.8
Sample B Female 51.3
Sample C Male 58.8
Sample D Male 66.6
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 79.7
Min nTPM: 53.0
Sample A Female 68.5
Sample B Female 53.0
Sample C Male 79.7
Sample D Male 66.5
Periaqueductal gray
nTPM: 53.7
Samples: 3

Max nTPM: 54.9
Min nTPM: 51.5
Sample B Female 54.9
Sample C Male 51.5
Sample D Male 54.6
Superior colliculi
nTPM: 60.5
Samples: 4

Max nTPM: 69.1
Min nTPM: 42.9
Sample A Female 62.1
Sample B Female 42.9
Sample C Male 68.0
Sample D Male 69.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 22.1
Sample C Female 20.9
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69174559 Antisense, RP_050329_03_A08, Mouse strain C57BL/6J (56 days, male) 8.2

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