HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:49.7 nTPM
HPA Brain:76.3 nTPM
GTEx:49.7 nTPM
FANTOM5:229.4 Scaled Tags Per Million
Pig:98.3 nTPM
Mouse:19.0 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029480Antibody HPA029481
Glial cells MediumMedium
Neuronal cells LowLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 76.3
Sample id Sample description nTPM
Hippocampus
nTPM: 76.3
1898 Male, age 80, left hemisphere 101.8
1855 Male, age 76, left hemisphere 96.5
2621 Female, age 67, right hemisphere 73.4
2529 Female, age 94, left hemisphere 66.8
2148 Female, age 91, left hemisphere 63.3
1911 Female, age 85, right hemisphere 55.8
Dentate gyrus
nTPM: 67.9
2010 Male, age 76, both hemispheres 95.3
1927 Female, age 91, both hemispheres 78.9
2530 Female, age 94, left hemisphere 68.6
2528 Male, age 74, both hemispheres 63.2
2246 Female, age 85, both hemispheres 55.9
2531 Female, age 67, both hemispheres 45.5
Entorhinal gyrus
nTPM: 65.0
1787 Male, age 76, left hemisphere 78.6
2117 Female, age 91, right hemisphere 67.8
2764 Male, age 80, right hemisphere 67.8
1938 Female, age 85, left hemisphere 64.6
2686 Male, age 75, right hemisphere 59.2
2613 Female, age 94, left hemisphere 52.1
Hippocampus, CA1
nTPM: 70.8
2527 Male, age 74, both hemispheres 88.6
2749 Male, age 80, left hemisphere 85.2
2082 Female, age 91, right hemisphere 62.9
1873 Female, age 85, both hemispheres 59.5
2045 Male, age 76, both hemispheres 57.6
Hippocampus, CA2
nTPM: 69.0
2249 Male, age 74, both hemispheres 85.3
1940 Female, age 85, left hemisphere 78.2
1892 Male, age 76, both hemispheres 71.9
1963 Male, age 80, left hemisphere 69.4
2113 Female, age 91, right hemisphere 60.2
2437 Female, age 94, left hemisphere 49.1
Hippocampus, CA3
nTPM: 60.6
2436 Male, age 74, both hemispheres 74.1
2137 Male, age 80, left hemisphere 68.2
1867 Male, age 76, both hemispheres 59.6
1891 Female, age 85, both hemispheres 59.6
2861 Female, age 67, both hemispheres 54.9
2620 Female, age 94, left hemisphere 47.5
Parahippocampal cortex
nTPM: 61.9
1850 Male, age 80, both hemispheres 73.0
1933 Female, age 85, both hemispheres 65.4
2018 Male, age 76, both hemispheres 64.5
2622 Female, age 67, right hemisphere 63.2
2692 Male, age 74, both hemispheres 62.9
2250 Female, age 67, right hemisphere 62.6
2693 Female, age 94, both hemispheres 62.3
1990 Female, age 91, right hemisphere 60.1
2245 Female, age 91, both hemispheres 53.6
2532 Female, age 72, left hemisphere 51.1
Perirhinal gyrus
nTPM: 65.8
1794 Male, age 80, right hemisphere 85.5
1847 Female, age 91, left hemisphere 68.7
1841 Female, age 85, right hemisphere 59.0
2848 Male, age 76, right hemisphere 58.3
2521 Female, age 94, right hemisphere 57.6
Subiculum
nTPM: 69.2
2042 Male, age 76, both hemispheres 76.0
1901 Male, age 80, both hemispheres 74.8
2619 Male, age 74, both hemispheres 74.8
2729 Female, age 91, right hemisphere 67.6
2438 Female, age 94, left hemisphere 64.2
1977 Female, age 85, both hemispheres 57.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.7
Samples: 197

Max nTPM: 191.8
Min nTPM: 13.6
Std nTPM: 19.0
Median nTPM: 47.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 191.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 147.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 103.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 94.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 94.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 85.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 85.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 78.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 77.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 77.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 76.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 229.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 229.4
FF:10169-103B7 60 years, female 236.7
FF:10153-102I9 76 years, female 222.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 98.3
Pig sample Sample description nTPM
Subiculum
nTPM: 87.1
Samples: 4

Max nTPM: 104.4
Min nTPM: 75.2
Sample A Female 104.4
Sample B Female 82.6
Sample C Male 86.1
Sample D Male 75.2
Dorsal hippocampus
nTPM: 98.3
Samples: 4

Max nTPM: 122.9
Min nTPM: 67.3
Sample A Female 122.9
Sample B Female 91.7
Sample C Male 111.2
Sample D Male 67.3
Entorhinal cortex
nTPM: 86.3
Samples: 4

Max nTPM: 92.0
Min nTPM: 76.7
Sample A Female 92.0
Sample B Female 91.1
Sample C Male 85.2
Sample D Male 76.7
Ventral hippocampus
nTPM: 96.2
Samples: 4

Max nTPM: 123.6
Min nTPM: 67.7
Sample A Female 101.4
Sample B Female 67.7
Sample C Male 123.6
Sample D Male 92.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.1
Sample A Male 18.8
Sample B Male 20.9
Sample C Female 16.1
Sample D Female 20.1
Hippocampal formation
nTPM: 19.0
Samples: 4

Max nTPM: 22.4
Min nTPM: 16.7
Sample A Male 16.7
Sample B Male 19.2
Sample C Female 17.6
Sample D Female 22.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
71393286 Antisense, RP_050512_04_E03, Mouse strain C57BL/6J (56 days, male) 3.6

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