MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.6 nTPM
HPA Brain:116.2 nTPM
GTEx:73.6 nTPM
FANTOM5:382.3 Scaled Tags Per Million
Pig:158.0 nTPM
Mouse:18.9 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 116.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.0
2586 Male, age 75, left hemisphere 103.2
2019 Male, age 18, unknown 102.5
2828 Female, age 72, unknown 101.0
1827 Male, age 72, unknown 94.5
1870 Female, age 42, unknown 93.8
2411 Female, age 72, unknown 93.5
1833 Male, age 53, unknown 87.7
2666 Male, age 74, left hemisphere 87.0
1830 Male, age 51, unknown 84.8
2219 Male, age 76, both hemispheres 72.1
Dorsal raphe nucleus
nTPM: 116.2
2298 Female, age 72, unknown 137.1
2047 Male, age 72, unknown 126.1
2750 Male, age 76, both hemispheres 116.1
1828 Male, age 53, unknown 108.6
2016 Female, age 72, unknown 93.0
Inferior colliculus
nTPM: 87.2
2097 Female, age 72, unknown 99.2
1890 Male, age 53, unknown 84.9
1848 Female, age 42, unknown 83.2
2849 Male, age 72, unknown 81.6
Median raphe nucleus
nTPM: 87.6
2220 Male, age 76, midline 87.6
Periaquaductal grey, anterior
nTPM: 101.8
1795 Male, age 51, unknown 108.0
2502 Female, age 75, unknown 102.1
1947 Male, age 18, unknown 95.4
Periaquaductal grey, dorsal
nTPM: 84.2
2850 Male, age 76, both hemispheres 103.5
1840 Male, age 53, unknown 82.6
1831 Male, age 72, unknown 79.7
2464 Female, age 72, unknown 71.0
Periaquaductal grey, lateral
nTPM: 88.1
2053 Male, age 18, unknown 88.6
2272 Male, age 74, both hemispheres 88.1
2140 Male, age 76, both hemispheres 87.5
Pretectal area
nTPM: 102.7
2007 Male, age 72, unknown 127.3
1944 Female, age 72, unknown 119.7
2667 Female, age 75, unknown 115.7
1816 Male, age 51, unknown 115.0
1817 Female, age 42, unknown 113.7
2273 Male, age 74, both hemispheres 105.7
2224 Female, age 72, unknown 102.7
1815 Male, age 53, unknown 98.9
2825 Male, age 18, unknown 92.6
2316 Male, age 76, right hemisphere 72.2
2407 Male, age 75, both hemispheres 66.8
Red nucleus
nTPM: 98.0
2725 Female, age 75, unknown 125.3
1821 Female, age 72, unknown 119.0
1904 Male, age 53, unknown 103.4
2584 Male, age 75, left hemisphere 100.6
1865 Male, age 51, unknown 97.7
2785 Male, age 18, unknown 95.7
2503 Female, age 72, unknown 94.8
2769 Male, age 72, unknown 93.7
2823 Male, age 76, right hemisphere 92.6
1954 Female, age 42, unknown 90.7
2227 Male, age 72, unknown 85.5
2588 Male, age 74, left hemisphere 76.8
Substantia nigra
nTPM: 115.1
1916 Female, age 42, unknown 178.2
2241 Male, age 72, unknown 131.4
1851 Male, age 51, unknown 120.6
1941 Male, age 53, unknown 119.3
1889 Female, age 72, unknown 116.4
2699 Male, age 18, unknown 109.3
2583 Male, age 75, right hemisphere 107.2
2665 Male, age 74, both hemispheres 95.8
2590 Female, age 75, unknown 90.0
2409 Female, age 72, unknown 82.3
Superior colliculus
nTPM: 95.3
2664 Male, age 75, both hemispheres 113.8
2087 Female, age 72, unknown 111.7
1796 Male, age 53, unknown 107.1
2587 Male, age 74, left hemisphere 105.6
2261 Male, age 18, unknown 101.7
1839 Male, age 51, unknown 96.7
1895 Male, age 76, right hemisphere 83.0
1913 Female, age 42, unknown 79.7
2668 Female, age 75, unknown 79.5
1995 Male, age 72, unknown 74.5
Ventral tegmental area
nTPM: 106.7
1915 Female, age 42, unknown 130.0
2410 Female, age 72, unknown 124.2
2223 Female, age 72, unknown 104.3
2218 Male, age 76, both hemispheres 100.2
2021 Male, age 53, unknown 96.4
1942 Male, age 51, unknown 85.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.6
Samples: 139

Max nTPM: 275.7
Min nTPM: 21.3
Std nTPM: 27.1
Median nTPM: 68.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 275.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 144.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 129.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 126.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 124.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 114.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 113.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 109.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 108.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 104.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 382.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 382.3
FF:10158-103A5 76 years, female 382.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 158.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 144.4
Samples: 4

Max nTPM: 163.0
Min nTPM: 101.7
Sample A Female 161.0
Sample B Female 101.7
Sample C Male 151.8
Sample D Male 163.0
Midbrain
nTPM: 158.0
Samples: 4

Max nTPM: 265.5
Min nTPM: 113.5
Sample A Female 265.5
Sample B Female 127.2
Sample C Male 125.8
Sample D Male 113.5
Periaqueductal gray
nTPM: 110.3
Samples: 3

Max nTPM: 121.2
Min nTPM: 96.0
Sample B Female 113.8
Sample C Male 121.2
Sample D Male 96.0
Superior colliculi
nTPM: 134.1
Samples: 4

Max nTPM: 153.9
Min nTPM: 101.8
Sample A Female 153.9
Sample B Female 101.8
Sample C Male 143.8
Sample D Male 137.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 25.3
Min nTPM: 15.6
Sample A Male 25.3
Sample B Male 15.6
Sample C Female 15.6
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
71393286 Antisense, RP_050512_04_E03, Mouse strain C57BL/6J (56 days, male) 3.8

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